Pairwise Alignments

Query, 303 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 308 a.a., LysR family transcriptional regulator from Agrobacterium fabrum C58

 Score =  171 bits (434), Expect = 2e-47
 Identities = 100/295 (33%), Positives = 162/295 (54%), Gaps = 5/295 (1%)

Query: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEELGVRLLQRDTRNLSLTQVG 62
           D++ + LF  + + +  S AAR+ G   +  S K+  LE +L  RL+ R TR  +LT+ G
Sbjct: 2   DVDELNLFVRIAQLRSISAAARDLGLTPAGASAKLLVLERKLSARLVHRTTRQATLTEDG 61

Query: 63  ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122
             F  H + I    EAA+A +        G+LRIA P SF++  I    + F R YP++ 
Sbjct: 62  LAFLPHAEHIVVAAEAARAALGREQAAPRGTLRIAAPASFARMHIVPGLADFCRQYPDLA 121

Query: 123 LDVQFTDNDIGLVGEGYDIAIKYGPLQSSDLVARLLFERQPILVASPGYLKTRGTPATPK 182
           LD++ +D+ + LV   +D+A++Y  L  S  VAR L     +LVASP YL+  G P+TP 
Sbjct: 122 LDLRISDSIVDLVEGAFDVAVRYTELSDSSFVARRLAPDNRVLVASPEYLEKHGRPSTPD 181

Query: 183 ELSDHSGILLGTSRSAPIWPL-GKGTRKTMVSFQRKVRVNSPIMVKQLALDDFGIAMLSN 241
           +L++H+ +++G   +  +W   GKG+          +R+N    V+  A    GIA+++ 
Sbjct: 182 DLAEHTCLVVG---ALDLWTFRGKGSVVIERRVTPSLRINDGTAVRDAASAGLGIALMAT 238

Query: 242 SACKTELANGQLVPILQEWPM-EPFKVYGVYSSRRQLATNISAFLDFFVKRFSSQ 295
                EL +G LVP+L E+P+     ++ +Y S R+LA  +  F+D+ V RF +Q
Sbjct: 239 WCASEELQSGALVPVLPEYPLISTQTLWALYPSSRELAPKVRVFIDWLVNRFGNQ 293