Pairwise Alignments

Query, 303 a.a., ribokinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 305 a.a., ribokinase from Pseudomonas simiae WCS417

 Score =  208 bits (529), Expect = 1e-58
 Identities = 123/299 (41%), Positives = 179/299 (59%), Gaps = 5/299 (1%)

Query: 4   ILVIGSANADHVMNFEYLPVPGQTLKSRSYRLEHGGKGANQAVACARLCLPDSRVDFICH 63
           ++V+GS N D V     LP  G+TL  +++    GGKGANQAVA ARL    + V  I  
Sbjct: 5   VVVVGSLNMDLVTRASRLPRAGETLIGQTFSTVPGGKGANQAVASARL---GADVSMIGC 61

Query: 64  LGQDSIGNEMRDSWLKDGIQAEGITLVDNVSTGTAMIFVADNGENAIGIAAGANAHLTPL 123
           +G D+ G+++R++ L +GI  + ++ VD  S+G A+I V D+ +NAI I AG+N  LTP 
Sbjct: 62  VGSDAYGSQLREALLVEGIDCQAVSTVDG-SSGVALIVVDDSSQNAIVIVAGSNGELTPA 120

Query: 124 ELEKHYALFANAQYLLIQLETPTETVSNALQMAKRLGITTVLNPAPAATQ-ELDYLKWVD 182
            L+   A+   A  ++ QLE P  TV  AL+  + LG T +LNPAPA+     ++   +D
Sbjct: 121 SLQAFDAVLQAADVIVCQLEVPMNTVGYALKRGRELGKTVILNPAPASGPLPAEWYASID 180

Query: 183 IITPNETEAEALTGIEVKHEEDAKLAAQWLHQQGITTVVITLGSKGAFISSPGFTGLIPA 242
            + PNE+EA AL+G+ V   + AK+AA  L Q G   V++TLG++GA  +       + A
Sbjct: 181 YLIPNESEASALSGVTVDSIDAAKVAATQLIQAGAGKVIVTLGAQGALFTDGQRFEHLQA 240

Query: 243 LTVQAIDTVAAGDTFNGALVVGLSEGMSIAAAVSFANAASAITVTREGAQRAIPYRSEV 301
             V+A+DT AAGDTF G     L+ G S A A+ F   A+A++VTR GAQ +IP   +V
Sbjct: 241 PKVKAVDTTAAGDTFVGGFAAALANGKSEAEAIRFGQVAAALSVTRAGAQPSIPTLHDV 299