Pairwise Alignments

Query, 303 a.a., ribokinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 403 a.a., ribokinase from Dickeya dadantii 3937

 Score =  187 bits (474), Expect = 5e-52
 Identities = 110/300 (36%), Positives = 170/300 (56%), Gaps = 5/300 (1%)

Query: 4   ILVIGSANADHVMNFEYLPVPGQTLKSRSYRLEHGGKGANQAVACARLCLPDSRVDFICH 63
           + ++GS N D V      P  G++L ++   L  GGKGANQA+A +   +  ++V F+  
Sbjct: 102 VCILGSFNVDIVARVARFPKGGESLLAQGSALGPGGKGANQAMAAS---MAGAKVHFVSK 158

Query: 64  LGQDSIGNEMRDSWLKDGIQAEGITLVDNVSTGTAMIFVA-DNGENAIGIAAGANAHLTP 122
           +G+D   +   +   K  I +  +   D   TG A+I+V+  NGEN I I +GAN  LT 
Sbjct: 159 VGKDQFSHFAYEHLSKSAIHSFKLYQSDTEPTGNAIIYVSLQNGENMIAIYSGANKTLTD 218

Query: 123 LELEKHYALFANAQYLLIQLETPTETVSNALQMAKRLGITTVLNPAPAATQELDYLKWVD 182
            E+ +      +A  LL+Q+E       +A+++A+ L    +LNPAP +   L  L +VD
Sbjct: 219 EEIAEIMPELEDADVLLLQMENNFPATLSAMKLARALDTQIILNPAPYSDDVLSCLDYVD 278

Query: 183 IITPNETEAEALTGIEVKHEEDAKLAAQWLHQQGITTVVITLGSKGAFISSPGFTGLIPA 242
           IITPNETEA  L+GIE+ + + A+ AAQ +H  G   V+IT+G+ GA +        IPA
Sbjct: 279 IITPNETEASLLSGIEINNLDSARQAAQKIHALGAARVIITMGANGALLFDGQQFQHIPA 338

Query: 243 LTVQAIDTVAAGDTFNGALVVGLSEGMSIAAAVSFANAASAITVTREGAQRAIPYRSEVS 302
               ++DT  AGD FNGA    ++ G S+A A ++ANA +++ V REGA   +P + +V+
Sbjct: 339 FPAVSVDTTGAGDAFNGAFAAAVAGGQSVAQAATYANAFASLAVEREGAAN-MPTQQQVT 397