Pairwise Alignments

Query, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 279 a.a., Transcriptional regulator, AraC family from Variovorax sp. SCN45

 Score =  118 bits (296), Expect = 1e-31
 Identities = 77/274 (28%), Positives = 128/274 (46%), Gaps = 6/274 (2%)

Query: 1   MTPVEHINYWRHPNLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLG 60
           + P     YW  P+L G+++  A+FT   +  HVH  + + V   G  +F ++G      
Sbjct: 4   LDPRNTSRYWHVPDLPGMDMLHADFTTHEYAPHVHHSFVIAVTEVGGAEFKSRGRTDIAH 63

Query: 61  QHGLSTLNPDETHDGQSRDAEGYRVKVMSIPVDFMNAISQEMG-QATHFFNAPMIDDSAL 119
           Q  L   NP E H G+   +  +R +   +    +  +   +G   T +F + ++ D  L
Sbjct: 64  QQALLVFNPSEPHSGRMGGSSRWRYRAFYLAEPGIRHLLTTLGIDQTRYFMSNILGDREL 123

Query: 120 YQYFIQLHNLLT--QEQCTELAAESHLLNFMQLLLTRH-PAGTLKLGQDQGLSLQQLNLI 176
              F++LH      +EQ   L  +   ++    L   H  AG   LG       Q L  +
Sbjct: 124 IASFLELHRAFDGHREQWDALRQQELFVHSFGSLFQSHGQAGQRVLGVPA--DAQVLAPV 181

Query: 177 KQKIHDEPWQNTQLEGLANEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLTHGT 236
            + +HD   +   LE +A   +L+ FQ +  F +  G+TPH YL ++RL  A   L  G 
Sbjct: 182 LELLHDAFAERLTLEQMAAAADLTPFQLIGAFNRTIGLTPHTYLTQLRLRAAIAQLAAGR 241

Query: 237 LVVDVAQQLGFFDQSHLNKAFKQAFLLSPVQFQR 270
            +++ A   GF+DQS L K FK+ F ++P+Q+ R
Sbjct: 242 PLIEAAIASGFYDQSALTKHFKRTFGMTPLQYVR 275