Pairwise Alignments

Query, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 269 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

 Score =  104 bits (260), Expect = 2e-27
 Identities = 74/271 (27%), Positives = 119/271 (43%), Gaps = 9/271 (3%)

Query: 3   PVEHINYWRHPNLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLGQH 62
           P  H + WR P L+ +E  +A  +   +  H H  + +G V  G   F       Q    
Sbjct: 2   PRSHADLWRDPALAHVESRRACHSRACYKAHSHPTFSIGAVDAGRSHFTGAADGQQHLAP 61

Query: 63  GLSTLNP-DETHDGQSRDAEGYRVKVMSIPVDFMNAISQEMGQATHFFNAPM--IDDSAL 119
           G   L P    H         +  +++ +  D++  +  E G        P+    ++ +
Sbjct: 62  GTLVLVPAHRVHACNPAPGLAWSYQMLHVDADWLTQLRLESGLGGIEAGEPVRICREAEV 121

Query: 120 YQYFIQLHNLLTQEQCTELAAESHLLNFM-QLLLTRHPAGTLKLGQDQGLSLQQLNLIKQ 178
           Y+ F  L+ LL    C     ++ L+ F+  L  + HP     L     L    LN +  
Sbjct: 122 YRQFCALNRLLFSSACNG-EKDAALIAFLGDLDFSAHPP----LAAAPALQAATLNGLLA 176

Query: 179 KIHDEPWQNTQLEGLANEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLTHGTLV 238
           +I  +      LE LA E  L ++Q +R F+ ATG TPHAYL   R+   ++ L+ G  +
Sbjct: 177 RIEHQDPAQLSLEVLAREAGLGRYQLIRAFRAATGFTPHAYLLNARVNRGRQLLSEGLAL 236

Query: 239 VDVAQQLGFFDQSHLNKAFKQAFLLSPVQFQ 269
            +VA QLGF DQSH  + FK    ++P Q++
Sbjct: 237 AEVAYQLGFADQSHFQRVFKAHVGVTPGQYR 267