Pairwise Alignments

Query, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 281 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

 Score =  135 bits (340), Expect = 1e-36
 Identities = 89/271 (32%), Positives = 136/271 (50%), Gaps = 10/271 (3%)

Query: 5   EHINYWRHPNLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLGQHGL 64
           E  + W+ P L  +E+  A +    F  HVH  Y   V+  GAQ+F ++GS +      +
Sbjct: 7   EQTHLWQAPALGDVEMLHARYYQQRFAPHVHEGYVFTVIESGAQRFWHRGSEHLAPVGSM 66

Query: 65  STLNPDETHDGQSRDAEGYRVKVMSIPVDFMNAISQEMGQATH---FFNAPMIDDSALYQ 121
             +NPDE H G +    G+R +      + +  +  E+    H    F   +I D AL  
Sbjct: 67  VLINPDELHTGATAHEAGWRYRGFYPEHERVTGVLDELELGRHGMPSFKDSVIHDPALAL 126

Query: 122 YFIQLHNLLTQEQCTELAAESHLLNFMQLLLTRHP--AGTLKLGQDQGLSLQQLNLIKQK 179
            F QLH L ++   + L  ++     +  L+ RH   A     G +     +   L++ +
Sbjct: 127 AFSQLHQL-SEASASALQQQTAWRQAVLALVQRHGQCAEPSAPGHEPLAVARARELLESQ 185

Query: 180 IHDEPWQNTQLEGLANEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLTHGTLVV 239
           + D P     LE LA  VNLS F F R F+QATG+ PHA+LK+ RL  A++ L HG    
Sbjct: 186 LADPP----SLEALAAAVNLSPFHFARVFRQATGLPPHAWLKQRRLARAREMLKHGLAAS 241

Query: 240 DVAQQLGFFDQSHLNKAFKQAFLLSPVQFQR 270
            VA  LGF DQSHL++ FKQA+ ++P  +++
Sbjct: 242 QVAFDLGFADQSHLSRQFKQAYGVTPGAYRQ 272