Pairwise Alignments

Query, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 277 a.a., AraC family transcriptional regulator from Dickeya dadantii 3937

 Score =  120 bits (301), Expect = 3e-32
 Identities = 83/273 (30%), Positives = 134/273 (49%), Gaps = 9/273 (3%)

Query: 5   EHINYWRHPNLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLGQHGL 64
           E + +    +L G+E+ QA + +  F +H H ++ +GV+ +GAQ+F   G  +      +
Sbjct: 8   EEVQFHHLKDLGGLEMLQARYHNQRFSRHSHENFCIGVIEEGAQRFYRTGGEHVAPTGDI 67

Query: 65  STLNPDETHDGQSRDAEGYRVKVMSIPVDFMNAISQEMGQ---ATHFFNAPMIDDSALYQ 121
             +N DE H G S  A G+  + +    D +  +S+++     AT +F   ++ D  L  
Sbjct: 68  ILVNADEIHTGHSAVASGWSYRAIYPSPDLLCHLSRDLRVSQGATPWFPDAVVHDPGLSA 127

Query: 122 YFIQLHNLLTQEQCTELAAESHLLNFMQLLLTRHPAGTL--KLGQDQGLSLQQLNLIKQK 179
                  LL Q     L  E+ L + +  L+ R+       ++    GLS+ +    K  
Sbjct: 128 QLRLAFTLLPQAG-NSLLKETLLFSSLSWLMLRYSKTRADGRVLPSAGLSILRA---KAW 183

Query: 180 IHDEPWQNTQLEGLANEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLTHGTLVV 239
           + + P Q+  L  LA    LS + FLRQFK   GMTPHAYL + RL  A+  L  G  + 
Sbjct: 184 LDECPEQDISLLQLAEIAGLSPWHFLRQFKALLGMTPHAYLVQARLRQARSLLIKGAGLS 243

Query: 240 DVAQQLGFFDQSHLNKAFKQAFLLSPVQFQRRM 272
           D A + GF DQSH  + FK+A  ++P +F R +
Sbjct: 244 DTASRCGFSDQSHFTRHFKRAMGITPGEFVRTL 276