Pairwise Alignments

Query, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 273 a.a., transcriptional regulator, AraC family from Agrobacterium fabrum C58

 Score = 97.8 bits (242), Expect = 2e-25
 Identities = 71/269 (26%), Positives = 124/269 (46%), Gaps = 8/269 (2%)

Query: 5   EHINYWRHPNLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLGQHGL 64
           E   +WR     G+E   A F    +  H H  + +G +  G+Q    +G+  Q G   L
Sbjct: 7   ETTRFWRDRRFGGMECLSATFLTHEYSPHAHDTFSIGAIESGSQISTIQGTTEQTGPGHL 66

Query: 65  STLNPDETHDGQSRDAEGYRVKVMSIPVDFMNAISQEM-GQATH---FFNAPMIDDSALY 120
             +NPDE HDG +    GYR +++    + +  I +++ G+  H    F   +  D  + 
Sbjct: 67  YLINPDEVHDG-APGGGGYRYRMIYPDAELLRDIIEDVTGRVFHGMPSFPKFLPRDPQMA 125

Query: 121 QYFIQLHNLLTQEQCTELAAESHLLNFMQLLLTRHPAGTLKLGQDQGLSLQQLNLIKQKI 180
             F   H  L + +   L A+  + + +  L  RH +  +   + +  +   +   +  +
Sbjct: 126 ASFQMAHRRL-EAKTGALEADEGMFSVLAALFGRHGSAIILAVETREKTA--VYNARDYL 182

Query: 181 HDEPWQNTQLEGLANEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLTHGTLVVD 240
            D    +  LE LA+   LS+   +R F++   +TPHAYL  VR+  A++ L  G +  +
Sbjct: 183 TDNYETDIGLEELASIAGLSRAHLIRAFRKEFHITPHAYLTDVRIRQARRLLRAGEMPAE 242

Query: 241 VAQQLGFFDQSHLNKAFKQAFLLSPVQFQ 269
           VA   GF DQ+H  + FK    ++P QF+
Sbjct: 243 VAALCGFADQAHFTRHFKARTGVTPGQFR 271