Pairwise Alignments

Query, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 268 a.a., transcriptional regulator, AraC family from Agrobacterium fabrum C58

 Score =  106 bits (265), Expect = 5e-28
 Identities = 71/246 (28%), Positives = 125/246 (50%), Gaps = 12/246 (4%)

Query: 29  SFDKHVHLDYHLGVVTQGAQQFINKGSRYQLGQHGLSTLNPDETHDGQSRDAEGYRVKVM 88
           SF +H+H  + +G++ +GAQ+ ++     + G   + T+NP E HDG      G   +++
Sbjct: 26  SFPRHMHDQFGIGLIARGAQKSLSGRGMVEAGAGHVITVNPGEVHDGIPLGEGGRAWRML 85

Query: 89  SIPVDFMN---AISQEMGQATHFFNAPMIDDSALYQYFIQLHNLLTQEQCT--ELAAESH 143
            + ++ +    A   E  + T  F  P +D   L + F  + + +T ++     L ++  
Sbjct: 86  YLDIEIVRDAIADISEKDRGTFEFAYP-VDTRPLAKRFNAVFSAVTAKERPGETLDSDET 144

Query: 144 LLNFMQLLLTRHPAGTLKLGQDQGLSLQQLNLIKQKIHDEPWQNTQLEGLANEVNLSKFQ 203
           LL F+   +       +    D       +   K  I D+P +  +L  LA E  +S+F+
Sbjct: 145 LLMFLADAMETAANPPVVAAPDT------IKRAKSSIDDDPARPFRLADLAKEAGMSQFR 198

Query: 204 FLRQFKQATGMTPHAYLKRVRLELAKKSLTHGTLVVDVAQQLGFFDQSHLNKAFKQAFLL 263
           FLR F +ATG+TPH+YL + R+ LA+ +L  GT   + A   GF DQSHLN+ F + F +
Sbjct: 199 FLRAFAKATGLTPHSYLLQRRVHLARHALADGTRPAEAAVIAGFVDQSHLNRFFVRQFGV 258

Query: 264 SPVQFQ 269
           +P  ++
Sbjct: 259 TPAVYR 264