Pairwise Alignments

Query, 596 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 615 a.a., Lipid A export ATP-binding/permease protein MsbA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  581 bits (1498), Expect = e-170
 Identities = 298/587 (50%), Positives = 418/587 (71%), Gaps = 8/587 (1%)

Query: 10  PIDKLNWHVIKLLWPYLLEYKGRVALAMSCLIVAKLASVGLPFILKDVVD--TLDANKTA 67
           P  + +W  ++ L PYL +YK RV LA++ ++ AK+A+VG+P +LK +VD  T+      
Sbjct: 24  PAPRSDWRTLQRLLPYLWQYKVRVVLALAFMVAAKMANVGVPLLLKQLVDAMTIRPGSVE 83

Query: 68  QTLSVPIGLVLAYGAVRLLTVITGEIRDTLFGRVTERAIRRLGLAVFDHLHRLDLDFHLE 127
             L VP+GL+LAYG +RL T +  E+R+ +F + TE A R + L VF HLH L L FHLE
Sbjct: 84  SMLVVPLGLLLAYGLLRLSTSVFTELRELVFAKATEGATRSISLQVFGHLHALSLRFHLE 143

Query: 128 RRTGGLSRDIERGTSGVSFLMRFMVFNIVPTLLEIAMVIGIFFFNYGVAFASITFISVLA 187
           R+TGG++RDIERGT GV  L+ + +++I PTL+E+ MV+ +    + + +  IT ++++ 
Sbjct: 144 RQTGGMTRDIERGTRGVQSLISYSLYSIFPTLIEVIMVLTLLGTQFDMGYVWITLVALVL 203

Query: 188 YIWFSVIATEWRTEYVRDAAKADSLSNTRAIDSLLNYETVKYFNNEKYESERYDQALDQW 247
           Y+ F+V+ TEWRT++ R   + +S S +RAIDSLLNYETVKYFNNE +E  RYD+AL++ 
Sbjct: 204 YVTFTVLVTEWRTQFRRKMNELESTSQSRAIDSLLNYETVKYFNNEGFEGRRYDEALEKL 263

Query: 248 EVAKRKNRLSLFALNGGQALIIAIAMTAMMALAAYKVTHNEMTLGDFVLINAFMMQLFMP 307
             A+ K++ +L  LN GQ L+IA+A+  M+  A   V   ++TLGD V++NAFM+QL++P
Sbjct: 264 RRARIKSQTTLSMLNAGQQLVIAVALVLMLWRATQGVVSGQLTLGDLVMVNAFMIQLYIP 323

Query: 308 LNFLGFVYREIRGALANIERMFSLLDKHPSIVDKPDALDFE-PKRGELSFENVSFSYDD- 365
           L FLG +YREI+ +L ++E+MF+LL+K   I D P A   +      + FENV FSY+  
Sbjct: 324 LGFLGVLYREIKQSLTDLEKMFALLEKEREIADVPGAQPLQLAGPPAVRFENVRFSYEPA 383

Query: 366 RPILRNVSFKVAAGKKVAVVGDSGAGKSTLIKLLFRFYDV----EQGRILIDGQDIRQLT 421
           R IL  +SF +  GK VAVVG SG+GKSTL +LL+RFYDV    E GRILIDGQDI+ +T
Sbjct: 384 REILHGISFDIPPGKTVAVVGPSGSGKSTLARLLYRFYDVSNAAEGGRILIDGQDIKAVT 443

Query: 422 QDALRRAIAIVPQDTVLFNDSLVENIRYGRPNASDDDVRHAIKLAHLEDFIASLSQGWDT 481
           Q ++R+AI IVPQDTVLFND++  NI YGRP+A  +    A + AH+  FI  L  G+ T
Sbjct: 444 QASVRQAIGIVPQDTVLFNDTIEYNILYGRPDAGHEAAVRAAQAAHIHPFIQHLPLGYAT 503

Query: 482 KVGERGLKLSGGEKQRVAIARAILKGSPVLVFDEATSSLDSRSEQAILSALREVAKGHTS 541
            VGERGLKLSGGEKQRVAIAR +LK  P+++FDEATS+LDS +E+AI + LR  A+  T+
Sbjct: 504 MVGERGLKLSGGEKQRVAIARTLLKNPPIVIFDEATSALDSANERAIQAELRSAARNKTT 563

Query: 542 LVVAHRLSTIVDADQIVVLSKGEIVEQGNHSSLLAQDGLYAKLWRIQ 588
           LV+AHRLST+VDA +I+VL  G+IVE+G H+ L+A+ G+YA +W +Q
Sbjct: 564 LVIAHRLSTVVDAHEILVLVNGDIVERGTHAELVARAGVYAGMWALQ 610