Pairwise Alignments

Query, 596 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 572 a.a., ABC transporter ATP-binding protein/permease from Pectobacterium carotovorum WPP14

 Score =  315 bits (806), Expect = 4e-90
 Identities = 205/577 (35%), Positives = 298/577 (51%), Gaps = 15/577 (2%)

Query: 18  VIKLLWPYLLEYKGRVALAMSCLIVAKLASVGLPFILKDVVDTL-DANKTAQTLSVPIGL 76
           +++  + Y   YKG   L   C I+A L  +G P  +K  +D L  A   +  L   + L
Sbjct: 1   MLRRFFSYYSPYKGLFVLDFGCAIIAGLLELGFPMAIKAFIDKLLPAQDWSLILLASVAL 60

Query: 77  VLAYGAVRLLTVITGEIRDTLFGRVTERAIRRLGLAVFDHLHRLDLDFHLERRTGGLSRD 136
           +  Y     L  I       L G   E  +RR     F+HL  L   ++   +TG +   
Sbjct: 61  LAVYLLNTALMAIVNYWGHAL-GVGIETDMRR---QAFEHLQNLPFRYYDNMKTGHIITH 116

Query: 137 IERGTSGVSFLMRFMVFNIVPTLLEIAMVIGIFFF----NYGVAFASITFISVLAYIWFS 192
           + +    V  +      ++    L I   IG F      +  +A  +I  +  + Y+   
Sbjct: 117 VTKDLEEVGEIAHHGPEDL---FLAIMTFIGAFILMATVHLNLALLTIIIVPFMTYLVSR 173

Query: 193 VIATEWRTEYVRDAAKADSLSNTRAIDSLLNYETVKYFNNEKYESERYDQALDQWEVAKR 252
             A    TE  R         N R  +S+     VK F NE +E + +    + +   K 
Sbjct: 174 YGAR--MTETWRQLFGQVGNFNARIEESVGGIRVVKAFANEDHEKKLFSHDNENYRRTKL 231

Query: 253 KNRLSLFALNGGQALIIAIAMTAMMALAAYKVTHNEMTLGDFVLINAFMMQLFMPLNFLG 312
           +    + A      L   +    +M    + V   E++ G F+     +   F P+  + 
Sbjct: 232 QAYRIMTASMTLSYLSTRLIQLIVMLAGIWYVIQGELSYGGFIGFLLLIEVFFRPVAKIT 291

Query: 313 FVYREIRGALANIERMFSLLDKHPSIVDKPDALDFEPKRGELSFENVSFSYD-DRPILRN 371
            V       +A  +R   L+D  P I D PDA D  P +G++ F  VSF Y  DRPILRN
Sbjct: 292 SVLESYPKGIAGFKRFTQLIDTVPEIADAPDAHDAGPLKGDIRFNQVSFGYSADRPILRN 351

Query: 372 VSFKVAAGKKVAVVGDSGAGKSTLIKLLFRFYDVEQGRILIDGQDIRQLTQDALRRAIAI 431
           +   + AG+ VA VG SGAGK+TL  LL RFYD+  G I IDG DIRQ+TQ +LR  I I
Sbjct: 352 IDLSIRAGETVAFVGPSGAGKTTLCSLLPRFYDLTSGAITIDGMDIRQMTQASLRSQIGI 411

Query: 432 VPQDTVLFNDSLVENIRYGRPNASDDDVRHAIKLAHLEDFIASLSQGWDTKVGERGLKLS 491
           V QD  LF  ++ ENI YG+ +ASDD++  A + A L++ I +L  G DT VGERG+KLS
Sbjct: 412 VQQDVFLFGGTIRENIAYGKLDASDDEIMEAARRARLDELIENLPDGLDTVVGERGVKLS 471

Query: 492 GGEKQRVAIARAILKGSPVLVFDEATSSLDSRSEQAILSALREVAKGHTSLVVAHRLSTI 551
           GG+KQR++IAR  LK  P+L+ DEATS+LD+ +EQAI  +L E++ G T+L++AHRL+TI
Sbjct: 472 GGQKQRLSIARIFLKNPPILILDEATSALDTATEQAIQQSLSELSAGRTTLIIAHRLATI 531

Query: 552 VDADQIVVLSKGEIVEQGNHSSLLAQDGLYAKLWRIQ 588
            +A +IVV+  G I+EQG+H  LL Q G+YA+L + Q
Sbjct: 532 QNAGRIVVVDNGSIIEQGSHQVLLDQSGIYARLHQAQ 568