Pairwise Alignments

Query, 596 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 616 a.a., ABC transporter ATP-binding protein/permease from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  419 bits (1077), Expect = e-121
 Identities = 242/566 (42%), Positives = 332/566 (58%), Gaps = 10/566 (1%)

Query: 32  RVALAMSCLIVAKLASVGLPFILKDVVDTLDANKTAQTLSVPIGLV---LAYGAVRLLTV 88
           R+  A+   +  K   V  P +L   V+ L A + A T +V +G     + +  VR L+ 
Sbjct: 41  RLISAILLTLAGKGLGVMAPLVLGAAVNRLAAGQGAAT-AVGLGFAAFAIGWTVVRFLSA 99

Query: 89  ITGEIRDTLFGRVTERAIRRLGLAVFDHLHRLDLDFHLERRTGGLSRDIERGTSGVSFLM 148
            +  I D +F  V   A R      F H   L LDFH  +R+G LSR ++RG+  V FL+
Sbjct: 100 ASPLISDVVFAPVRAAAQRATAAEAFAHALSLSLDFHQTKRSGALSRTMDRGSRAVDFLL 159

Query: 149 RFMVFNIVPTLLEIAMVIGIFFFNYGVAFASITFISVLAYIWFSVIATEWRTEYVRDAAK 208
           R + FN+VPT +E+ +  G+    Y   FA++  + V+ Y   +   + WR E+ R    
Sbjct: 160 RILAFNLVPTGVELVLAAGVLGAKYDWRFAAVAVVVVVIYTAATFAMSNWRLEHRRIMNA 219

Query: 209 ADSLSNTRAIDSLLNYETVKYFNNEKYESERYDQALDQWEVAKRKNRLSLFALNGGQALI 268
           ADS +   ++D+LLNYETVK F  E   ++ YD+AL  +  A  K   SL  LNG QAL+
Sbjct: 220 ADSEAAGVSVDALLNYETVKSFGAETRAAQTYDRALGDYAEASLKANSSLNMLNGMQALV 279

Query: 269 IAIAMTAMMALAAYKVTHNEMTLGDFVLINAFMMQLFMPLNFLGFVYREIRGALANIERM 328
           + + +  M  +A ++     M  GD       M+ L+ PLN LGF YREIR +  ++E M
Sbjct: 280 MNLGLGVMAVMAGFEAAAGRMGPGDVTAAVLIMISLYAPLNILGFAYREIRQSFIDMEEM 339

Query: 329 FSLLDKHPSIVDKPDALDF----EPKRGELSFENVSFSYDDRPI-LRNVSFKVAAGKKVA 383
             +  + P + D P+A       + +   ++FE V F +D R   L +VSF  A G   A
Sbjct: 340 LKVTRQTPQVADSPNAFALPRPVDARGASVAFEAVGFRHDARANGLEDVSFYAAPGTTTA 399

Query: 384 VVGDSGAGKSTLIKLLFRFYDVEQGRILIDGQDIRQLTQDALRRAIAIVPQDTVLFNDSL 443
           +VG SGAGKST++KL  R  D ++GR+LIDG D R++TQ +LR A+A+VPQD  LFND+L
Sbjct: 400 LVGPSGAGKSTIVKLALRLLDPQEGRVLIDGHDAREVTQASLRSAVALVPQDVALFNDTL 459

Query: 444 VENIRYGRPNASDDDVRHAIKLAHLEDFIASLSQGWDTKVGERGLKLSGGEKQRVAIARA 503
             NI + RP A + +V  A + A L DFI  L  G  TKVGERGLKLSGGE+QRV IARA
Sbjct: 460 AANIAFARPEADEAEVWAAAEAAELADFIRGLPDGMQTKVGERGLKLSGGERQRVGIARA 519

Query: 504 ILKGSPVLVFDEATSSLDSRSEQAILSALREVAKGHTSLVVAHRLSTIVDADQIVVLSKG 563
           +L    +L+ DEATS+LDSR+E AI   LR+   G T+LVVAHRLST+ DADQI+VL  G
Sbjct: 520 LLADPCILILDEATSALDSRTEAAIQKTLRKARNGRTTLVVAHRLSTVADADQILVLKAG 579

Query: 564 EIVEQGNHSSLLA-QDGLYAKLWRIQ 588
            IVE+G H  L+A Q G YA LWR Q
Sbjct: 580 RIVERGGHHELVARQGGEYAALWRKQ 605