Pairwise Alignments

Query, 596 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 599 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  313 bits (802), Expect = 1e-89
 Identities = 222/596 (37%), Positives = 330/596 (55%), Gaps = 58/596 (9%)

Query: 22  LWPYLLEYKGRVALAMSCLIVAKLASVGLPFILKDVVD----TLDANKT----AQTLSVP 73
           L+PYL  Y+G +A A+  L+++   ++ LP  ++ ++D    T D        A  L++ 
Sbjct: 21  LFPYLRRYRGLMAAALFALVLSSATTLALPLAVRRIIDHGFQTPDGGMINSYFAMLLAIA 80

Query: 74  IGLVLAYGAVRLLTVITGEIRDTLFGRVTERAIRRLGLAVFDHLHRLDLDFHLERRTGGL 133
           + L LA  A+R   V+T          + ER +  L   VF HL  L   F    R+G L
Sbjct: 81  VVLALA-SAMRYYYVMT----------IGERVVADLRRDVFAHLTTLSQQFFDSNRSGEL 129

Query: 134 SRDIERGT--------SGVSFLMRFMVFNIVPTLLEIAMVIGIFFFNYGVAFASITFISV 185
           +  +   T        S  S  +R    NI+     +AM+I       G+A  +I FI V
Sbjct: 130 TSRLTADTVQIRSAFGSSASVALR----NIIMCCGAVAMMIYTSPGLSGLALLAIPFI-V 184

Query: 186 LAYIWFSVIATEWRTEYVRDAAKADSLSNTRAI--DSLLNYETVKYFNNEKYESERYDQA 243
              I F       R+   R     D+L+N+ A   +++    TV+ FN E   + RY  +
Sbjct: 185 FPLIAFG------RSVRARSRTTQDTLANSAAYASETIAASRTVQSFNAEVLANARYGAS 238

Query: 244 LDQWEVAKRKNRLSLFALNGGQALIIAIAMTAMMALAAY---KVTHNEMT---LGDFVLI 297
           +   E A +  R ++ A +   A+ IA+   +++ +  Y    V    MT   LG FVL 
Sbjct: 239 V---EAAYQGARAAIGARSVLTAVAIALVFGSVVGILWYGAQNVLAGSMTAGTLGQFVLY 295

Query: 298 NAFMMQLFMPLNFLGFVYREIRGALANIERMFSLLDKHPSIVDK--PDALDFEPKRGELS 355
           +         L  L  V+ E+  A    ER+  LL++   + +   P A+  +P RGE  
Sbjct: 296 SVIAAS---GLGQLSEVWGELAQAGGAAERLSELLNERSPVAEPAAPVAMP-QPPRGEAE 351

Query: 356 FENVSFSYD---DRPILRNVSFKVAAGKKVAVVGDSGAGKSTLIKLLFRFYDVEQGRILI 412
           F+NV F Y     RPI+  +S KVAAG+ VA+VG SGAGKST+  LL RFYD +QGRI I
Sbjct: 352 FDNVDFVYPLATGRPIVSGLSLKVAAGETVAIVGPSGAGKSTVFSLLMRFYDPQQGRITI 411

Query: 413 DGQDIRQLTQDALRRAIAIVPQDTVLFNDSLVENIRYGRPNASDDDVRHAIKLAHLEDFI 472
           DG DIR ++   LR  ++IVPQD  +F  S+ +NI +GRP A+ +DVR A   A  + FI
Sbjct: 412 DGVDIRNVSLADLRARLSIVPQDVAIFASSIHDNIAFGRPEATREDVRAAAIAAQADGFI 471

Query: 473 ASLSQGWDTKVGERGLKLSGGEKQRVAIARAILKGSPVLVFDEATSSLDSRSEQAILSAL 532
             L  G+DT+VGERG+ LSGG++QR+AIARAIL+ +P+L+ DEATS+LD+ SE  +  AL
Sbjct: 472 ERLGDGYDTQVGERGVTLSGGQRQRIAIARAILRDAPILLLDEATSALDAESETLVQKAL 531

Query: 533 REVAKGHTSLVVAHRLSTIVDADQIVVLSKGEIVEQGNHSSLLAQDGLYAKLWRIQ 588
            E+ K  T++V+AHRL+T++ AD+I+V+ +G I+E+G H SL+ Q+GLYA+L R+Q
Sbjct: 532 DELMKTRTTIVIAHRLATVLKADRILVMDEGRIIEEGTHQSLIRQNGLYARLARLQ 587