Pairwise Alignments

Query, 224 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 222 a.a., DNA-binding response regulator from Pseudomonas putida KT2440

 Score =  219 bits (559), Expect = 3e-62
 Identities = 113/221 (51%), Positives = 151/221 (68%), Gaps = 2/221 (0%)

Query: 1   MKLLLVEDNPMLVSELEKQLKQAGYVTDITDKALEADYLVKETQYDCVILDIGLPDGNGL 60
           M+LLLVEDN  L  EL   L++ GY  D      +A Y  +   YD +ILD+GLP   GL
Sbjct: 1   MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60

Query: 61  ELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAH 120
           ++L  WR  G++TPV++LTAR  W E++EG  AGADDYL KPFH +EL  RIQAL+ RA 
Sbjct: 61  DVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 GRLNNPNKQLSYGGVTLDEAEQTVSVGEQLYELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180
           G  N P  +L   G+ LDE+ Q VS      +LTA EFRLL+ F++ P+++LSK+ L + 
Sbjct: 121 GLANQP--KLEAAGLHLDESRQCVSRDGVDVQLTAAEFRLLRYFMLHPQQILSKSHLAEH 178

Query: 181 LYQFDDEKESNVVEVYVTHLRKKLGKTAIETRRGQGYIFHG 221
           LY  + E++SNV+EV+V HLR+KLG++ IETRRGQGYI+ G
Sbjct: 179 LYDGETERDSNVLEVHVNHLRRKLGRSVIETRRGQGYIYAG 219