Pairwise Alignments

Query, 354 a.a., conserved hypothetical protein TIGR00157 (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 349 a.a., small ribosomal subunit biogenesis GTPase RsgA from Dickeya dianthicola ME23

 Score =  385 bits (989), Expect = e-112
 Identities = 200/352 (56%), Positives = 257/352 (73%), Gaps = 8/352 (2%)

Query: 1   MSKKKPLSQGQLRRMRANHEKRLNRDSGDKNTPELQDSSLGPEQSGTVISRFGQHADIET 60
           MSKKK LS+GQ RR+ ANH++RL       +  E  D+ LG  Q G +ISRFG HAD+E 
Sbjct: 1   MSKKK-LSKGQQRRVSANHQRRLKHAD---SKVEWDDAQLGEPQEGIIISRFGMHADVEA 56

Query: 61  EDGHIVRCNIRRTITSLVTGDKVIVRLAIESQANSGIAGIVEAVHPRHSSLSRPDLYDGV 120
            +G + RCNIRRTI SLVTGD+V+ R   E+ A  GI+GIVEAVHPR S L+RPD YDG+
Sbjct: 57  PNGELHRCNIRRTIHSLVTGDRVVWRAGNETLA--GISGIVEAVHPRQSVLTRPDYYDGL 114

Query: 121 KIIASNIDQILIVSSVLPSFTTQIIDRYLVAAEDTDIPPIIILNKIDLLTPEEAPAIEEA 180
           K IA+NIDQI+I+S++LP  +  IIDRYLVA E  ++ P+I+LNKIDLL  E    +EEA
Sbjct: 115 KPIAANIDQIVIISAILPELSLNIIDRYLVACETLEVEPLIVLNKIDLLDDEGRAFVEEA 174

Query: 181 LKRYQDIGYPVYKVSSKLGEGLETIKALLKDKVSVFAGQSGVGKSSLVNALL--PEAELL 238
           +  Y+ + Y V  +SS   +G+  ++A L  +VS+FAGQSGVGKSSL+NALL    A++L
Sbjct: 175 MDIYRALHYRVLMMSSHTQQGVAELEAALTGRVSIFAGQSGVGKSSLLNALLYPDNAQIL 234

Query: 239 VGDVSDNSGLGQHTTTTAKLLHLPSGGDLIDSPGVREFALWHLPAQRVGWCFIEFRDFLG 298
           V +VSD SGLGQHTTT A+L H P GGD+IDSPGVREF LWHL  ++V   FIEFRD+LG
Sbjct: 235 VNNVSDASGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQVTRGFIEFRDYLG 294

Query: 299 GCKFRDCKHGDDPGCALKAAVDAGKISEDRFNNYHRIIASLDEQRHARQFRA 350
            CKFRDCKH  DPGCA+ AA++ G I+ +RF+NYHRI+ S+ + +  + F A
Sbjct: 295 SCKFRDCKHDTDPGCAIHAALERGDIAPERFDNYHRILESMAQVKTRKSFSA 346