Pairwise Alignments

Query, 134 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 138 a.a., protein inhibitor of RNase E from Escherichia coli BL21

 Score =  142 bits (359), Expect = 1e-39
 Identities = 73/138 (52%), Positives = 95/138 (68%), Gaps = 4/138 (2%)

Query: 1   MSIESQLKAQFAENRDIVQALLDDGSEPDAEYTIEHHFSSSNFERLEKAAVDAFKLGFEV 60
           M+   QL+ Q  E R I++ LL+DGS+PDA YTIEHH S+ + E LEKAAV+AFKLG+EV
Sbjct: 1   MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEV 60

Query: 61  NDAEEMELEDGSVIFCFDAIAYHKLEVPLLDKATEQLLQLAAKQKVDYDGWGTYFV---G 117
            D EE+E+EDG ++ C D ++   L   L+D   EQL+ LA K  V+YDGWGTYF    G
Sbjct: 61  TDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNG 120

Query: 118 DEIDDEE-DDEQDDGFPH 134
           ++ DDE+  DE DDG  H
Sbjct: 121 EDGDDEDFVDEDDDGVRH 138