Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 973 a.a., histidine kinase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  221 bits (564), Expect = 1e-61
 Identities = 140/485 (28%), Positives = 253/485 (52%), Gaps = 24/485 (4%)

Query: 19  SVVRSSWLMLVAALTFMGISWFVLQEYLR---ERGEERFNNNVQELSEAVSRRMTAYEQV 75
           S +R  ++ + + L    +++F+  E  +   ER  + F+   ++++E++++RM  Y Q+
Sbjct: 8   SFIRDYFIAVFSFLLIFLLTFFIYSETKKKAEERSAKMFSLRAEQVTESINKRMRDYIQI 67

Query: 76  LRGGVGLFLSSRGVTRSEWQTYVANARLSDYYPGIQGLGFAELVTPATLDEFTQQVQQEG 135
           L GG  LF+S+  VTR +W TY     L + YPG+QG G+A ++    +    + +++EG
Sbjct: 68  LIGGKALFISADTVTRKDWHTYYKTLNLEENYPGMQGFGYAVVLNADNVPAHVKMIRKEG 127

Query: 136 FSDFRITPIGDRELYCVIKYLEPFDWRNQRAFGFDMCSEATRRSAILKAITSGLPKVSGK 195
           F ++ I P G R++Y  I YLEPF  RN RAFG+DM SE  R+SA+  A  +  P +SGK
Sbjct: 128 FKNYGIYPEGKRDVYTSIVYLEPFSDRNLRAFGYDMFSEPVRQSAMRIARDTRQPAMSGK 187

Query: 196 VTLVQETPENTQAGVLMYVPLY--RGQPMTEVERMQQAIGVVYALFRMNDLMQGIMGKRF 253
           V L+QET ++ QAG L+Y+P+Y    +P +  ER +   G VY+ FR  DLM  ++   F
Sbjct: 188 VRLMQETGKDEQAGFLIYLPVYENNAEPESIQERQRLIKGYVYSPFRAKDLMMAVLTDDF 247

Query: 254 SGIKLAIYDGSEANRTHLMFSSDPKLPSSKD---VFYQSQLETMEGQVWRIDVSSESRFI 310
             + + +YDGS+  +  L+FS+D  L    D    + +    T+    WR+ +S+++ F 
Sbjct: 248 QDLDVEVYDGSKLAKEDLLFSTDSTLYYHTDHDREYSELNTITIGNHTWRLYISAKAGFS 307

Query: 311 SRAEQTRSVWLQVIGCAFILALFYAVISMARNRYQESMLTAELIANEKRFRLIIEASPSA 370
             A+     ++ + G      +F+ + S++  R            + +  + I + + +A
Sbjct: 308 RSADSELPYFILLGGSIISFLMFFIIWSLSNTR-----------RSNRLKQTITDNATAA 356

Query: 371 LFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLPETLREIHQQHLSHYLVH---PI 427
           LF++D+ G  T +N   E + G+T EE+  ++++ ++     +     +S   +     I
Sbjct: 357 LFIIDEKGYCTFMNPAAEEMTGFTFEEMQEKTLHDMVHYKYADGSPYPVSMCPIRSALTI 416

Query: 428 AKNMSMRDDLLGCCKDGTPLAVEVGLTP-VHFSNGIYILTTINNISERKRIEAQRIEHMA 486
            K M   +D+    KDGT   V   + P V   +  Y +  + +I++ K+ +   IE  A
Sbjct: 417 NKPMRAYEDMF-VRKDGTMFNVMCAVQPIVESGSESYAIIEVRDITDEKQAQQAIIESEA 475

Query: 487 ELERI 491
               +
Sbjct: 476 RFRNM 480



 Score =  102 bits (253), Expect = 1e-25
 Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 8/224 (3%)

Query: 487 ELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSEDLVDNTNENVQKYLGLIQNRIQRM 546
           EL RIN +LD F Y ASHDLKSP+  +E L T L + L         + L ++QN I ++
Sbjct: 740 ELLRINNDLDNFVYTASHDLKSPIANMEGLATLLRDILQGKLEAEDMQVLDMVQNAINKL 799

Query: 547 VRLLDGLLTFSRIGRVDNEMVE-VDSRQLVEDMFALVA---PPQGFELVLEGDFPHFKTV 602
              +  L   +++ +  +  VE +    +++D+ A ++      G     +    +    
Sbjct: 800 KGTIADLAEITKVQKELHSSVEPLSFEHMLQDITADISGMVQEAGAVFKTDLQVENILYA 859

Query: 603 KTLLELVVRNLISNAIKHH-DRGFGVLKVLCETKNTYYWFSVVDDGPGISSEFQLKVFEM 661
           +  L  ++ NL+SNAIK+   +    + +    +  Y    V D+G GI  E Q K+F M
Sbjct: 860 RKNLRSIIYNLVSNAIKYKAPQRKPEVCISTYLQEGYVVLEVKDNGLGIKKEQQHKLFSM 919

Query: 662 FQTLRPRDEVEGSGLGLSLVKKTVDSLGGKIQLES-VGRGCCFR 704
           F+ L     VEG+G+GL +VK+ +++ GGKI++ES +G+G  FR
Sbjct: 920 FKRL--HSHVEGTGIGLYIVKRIIENNGGKIEVESELGKGTTFR 961