Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 540 a.a., Sensor histidine kinase from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  118 bits (295), Expect = 9e-31
 Identities = 109/399 (27%), Positives = 183/399 (45%), Gaps = 17/399 (4%)

Query: 321 LQVIGCAFILALFYAVISMARNRYQESMLTA-ELIANEKRFRLIIEASPSALFMVDKTGV 379
           +Q+   + + AL   ++   R R  E+  TA E     +    +  A       +D  GV
Sbjct: 143 VQLDALSRLSALVATLLEHERARQLEARRTANEAQRAHEELTAMAAAGLDLQAYIDADGV 202

Query: 380 ITLVNTQGERLFGYTREELLGRSINMLLPETLREIHQQHLSHYLVHPIAKNMSMRDDLLG 439
              VN       G TR E++G ++     E L E +  ++    +       ++    + 
Sbjct: 203 YRHVNQTYLNYIGSTRSEVIGLTVK----ERLGEANYNNMVGSKMERAMAGETVIYQRVS 258

Query: 440 CCKDGTPLAVEVGLTPVHFSNGIY--ILTTINNISERKRIEAQRIEHMAELERINQELDR 497
             K      +E+ L PV  ++G    ++    +I E K  E Q  E + +LE+   E +R
Sbjct: 259 HFKVAGSRHMEIALLPVRGADGQVSGVVMRGRDIQELKNKERQLGETIVQLEKKTLEQER 318

Query: 498 FAYIASHDLKSPLRGIEQLTTWLSEDLVDNTNENVQKYLGLIQNRIQRMVRLLDGLLTFS 557
           F +I SHDL+ P+  I   T+ L  D   +     ++YLG ++   QRM  LLD LL + 
Sbjct: 319 FIHILSHDLREPINAINNFTSLLEADHQQDLAPEARRYLGFVRAGGQRMACLLDSLLKYV 378

Query: 558 RIGR--VDNEMVEVDS--RQLVEDMFALVAPPQGFELVLEGD-FPHFKTVKTLLELVVRN 612
           R+ R  +D   VEV +   Q+ +D+   +A  QG    L+ D  P  K    LL +V++N
Sbjct: 379 RLDRHPLDRAPVEVMAVVAQVGDDLGDALARTQG---RLQCDALPMVKADAALLRMVLQN 435

Query: 613 LISNAIKHHDRGFGV-LKVLCETKNTYYWFSVVDDGPGISSEFQLKVFEMFQTLRPRDEV 671
           L+SN +     G    +++    +  +    V D+G GI+ E Q  +F++F+ L+P    
Sbjct: 436 LVSNGLAFAQPGVPPHVRISATREQGFDQIHVHDNGLGIAPEHQAIIFDLFKRLQPHKTH 495

Query: 672 EGSGLGLSLVKKTVDSLGGKIQLESV-GRGCCFRFSWPI 709
            GSGLGL + ++     GG + ++SV G G  F    P+
Sbjct: 496 AGSGLGLPICRRIAALHGGHLSVQSVPGEGSRFTLHLPV 534