Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1264 a.a., Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  138 bits (347), Expect = 2e-36
 Identities = 127/461 (27%), Positives = 211/461 (45%), Gaps = 70/461 (15%)

Query: 297  QVWRIDVSSESRFISRAE--------QTRSVWLQVIGCAFILALFYAVISMARNRYQE-S 347
            + WR  +  +  ++S +           + +++Q+I       +   VI +     Q  S
Sbjct: 805  ETWRPTIDGQQIYVSASYLPDFNDEGTVQGLFVQIIDITDRKRIEERVIHLNEELEQRIS 864

Query: 348  MLTAELIANEKRFRLIIE-ASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINML 406
              + EL+ +E+RFRL+++      +F +D  G+IT      +R+ GY+  ++LGR   +L
Sbjct: 865  ERSLELLESEQRFRLMVDNLRDYCIFFMDAEGIITDWTDSAQRMDGYSPTQMLGRHYGVL 924

Query: 407  LP------------ETLR--------EIHQQHL----SHYLVHPIAKNMSMRDD---LLG 439
                          + LR        E+H  H     S Y  H +   +++RDD   L G
Sbjct: 925  FDPANPDHGKVSAMQMLRLAASRGQHELHNWHTRKDGSQYWSHSVL--IALRDDSGELKG 982

Query: 440  CCKDGTPLAVEVGLTPVHFSNGIYILTTINNISERKRIEAQRIEHMAELERINQELDRFA 499
              K    +     L  +           + NI++   +E + +E   +L   N++L+ F+
Sbjct: 983  FAKINRDMTDAKRLDDL-----------MRNINDE--LENRVVERTEQLLAANKDLESFS 1029

Query: 500  YIASHDLKSPLRGIEQLTTWLSEDLVDNTNENVQKYLGLIQNRIQRMVRLLDGLLTFSRI 559
            Y  SHDL+SPLR I    + L E L  N +E   +YL  I N  + M +L+DGLL FSR+
Sbjct: 1030 YSVSHDLRSPLRHISSFVSLLEEHLGGNCDEVSARYLSTIGNSARHMSQLIDGLLAFSRL 1089

Query: 560  GRVDNEMVEVDSRQLVEDMFALV---APPQGFELVLEGDFPHFKTVKTLLELVVRNLISN 616
            GR    +  VD   LV+ +   +      +  + V+  D P  +    LL  V  NL+ N
Sbjct: 1090 GRSAVNLTAVDFTLLVDAVVNQIGHDTEGRVVDWVVAPDLPVVQGDALLLREVWANLLGN 1149

Query: 617  AIKHH--------DRGFGVLKVLCETKNTYYWFSVVDDGPGISSEFQLKVFEMFQTLRPR 668
            A K+         + G+ +  V+       Y F V D+G G  +++  K+F +FQ L   
Sbjct: 1150 AYKYTRPRERTRIEVGWSMDPVV------GYTFFVRDNGVGFDTKYAQKLFGVFQRLHRA 1203

Query: 669  DEVEGSGLGLSLVKKTVDSLGGKIQLES-VGRGCCFRFSWP 708
             E EG+G+GL+L ++ ++  GG I  ES +G G  F FS P
Sbjct: 1204 SEFEGTGIGLALTRRIIERHGGTIWAESQLGEGSVFYFSLP 1244



 Score = 30.4 bits (67), Expect = 6e-04
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 18/146 (12%)

Query: 337 ISMARNRYQESMLTAELIANEKRFRLIIEASPSALFMVDKTGVITLVNTQGERLFGYTRE 396
           ++ A+ R  +++  A+ + N+         +P     VD  GV  L+N       GY   
Sbjct: 335 LAEAKERIHQALRDAQALYNQ---------APCGYHSVDAEGVFVLINQTALDWLGYEHH 385

Query: 397 ELLG--RSINMLLPETLREIHQQHLSHYLVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLT 454
           E++G  R  +++ PE     HQ  +S  L            +     ++G+     +  T
Sbjct: 386 EIVGKLRFHDIVAPE-----HQHLVSERLARMTRGEKLEPAEFPIRRRNGSTFLALLSST 440

Query: 455 PVHFSNGIYILT--TINNISERKRIE 478
            V    G ++ T  T+ +I+ERK  E
Sbjct: 441 AVVDEEGRFVRTNNTLVDITERKAAE 466



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 17/137 (12%)

Query: 367 SPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLPETLREIHQQHLSHYLVHP 426
           +P     +D  G+   +N       GY REE++G+   M   + +   H   L   +   
Sbjct: 614 APCGYHSLDVNGIYVSINDTELDWLGYRREEVVGK---MAFRDMMAPRHSDLLERRM--- 667

Query: 427 IAKNMSMRDDLLGCC------KDGTPLAVEVGLTPVHFSNGIYIL--TTINNISERKRIE 478
                 ++DD L         +DG+     +  + V  +NG ++   TT+ +I+ RK  E
Sbjct: 668 ---QKILKDDALEAVEYEMRRRDGSTFHALLSSSAVRDANGQFLRSNTTVVDITRRKAAE 724

Query: 479 AQRIEHMAELERINQEL 495
               ++   L+ I   +
Sbjct: 725 MALRDNQRFLQTITDHV 741