Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 703 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  140 bits (354), Expect = 2e-37
 Identities = 108/362 (29%), Positives = 180/362 (49%), Gaps = 14/362 (3%)

Query: 355 ANEKRFRLIIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLP-ETLRE 413
           A  +R    ++ +P+ +   D  GVI   N+   R  G+  ++++G +  +L   ET  E
Sbjct: 346 ARMRRLSQTVDQNPNMILTTDSRGVIDYANSSFYRFTGFEPDQVIGATPRILKSDETPPE 405

Query: 414 IHQQHLSHYLVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLTPV--HFSNGIYILTTINNI 471
           +        L   I      R +L+   +DG      V ++PV    S     +    +I
Sbjct: 406 VFVD-----LWQTIRAGREWRGELVNRRRDGQTYWASVVISPVLDEESGLCGFVGMQEDI 460

Query: 472 SERKRIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSEDLVDNTNEN 531
           SERKRIE +  E +AEL+R N+EL+ FAY+ASHDL+ PLR I      L + L  + ++ 
Sbjct: 461 SERKRIEGRVAELVAELKRSNEELENFAYVASHDLRQPLRMINSYLGLLRKRLAASFDQE 520

Query: 532 VQKYLGLIQNRIQRMVRLLDGLLTFSRIGRVDNEMVEVDSRQLVED---MFALVAPPQGF 588
            +++     +  +R+  ++  LL FSRIG+     + +D   +V D     A+     G 
Sbjct: 521 AEEFFAFASDGARRLDLMIVDLLEFSRIGKQSTREM-LDLNGVVADGMQNLAVAIRDCGA 579

Query: 589 ELVLEGDFPHFKTVKTLLELVVRNLISNAIKH-HDRGFGVLKVLCETKNTYYWFSVVDDG 647
           E+ +    P     ++ L  + +NLI NA+K+  +    V+ + C      +  SV D+G
Sbjct: 580 EISVAPGLPTIPGDRSELTRLFQNLIGNALKYCPEERKPVVDISCRDGGREWILSVRDNG 639

Query: 648 PGISSEFQLKVFEMFQTLRPRDEVEGSGLGLSLVKKTVDSLGGKIQLES-VGRGCCFRFS 706
            GI +E   KVF +FQ +  RD+ EG+G+GL++ +K  +  GG+I +ES V  G  F  +
Sbjct: 640 IGIEAECLEKVFGIFQRMVSRDKYEGTGIGLAVCRKIAEHHGGRIWVESVVDHGSTFHVA 699

Query: 707 WP 708
            P
Sbjct: 700 LP 701