Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 626 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score = 88.6 bits (218), Expect = 9e-22
 Identities = 90/390 (23%), Positives = 164/390 (42%), Gaps = 19/390 (4%)

Query: 324 IGCAFILALFYAVISMARNRYQESMLTAELIANEKRFRLIIEASPSALFMVDKTGVITLV 383
           +G A    L Y  + ++  +   + L  E    +   R ++++ P  +F  D        
Sbjct: 248 LGKALAYLLIYGALFVSGVQTPYTALAKE----QALLRTLMDSVPDLIFFKDPQSRYLGY 303

Query: 384 NTQGERLFGYTREELLGRSINMLLPETLREIHQQHLSHYLVHPIAKNMSMRDDLLGCCKD 443
           N       G    E++G++ +   P  + E ++   S       A   +  ++ +    D
Sbjct: 304 NRAFASYCGRPEAEMIGKTDDEFAPPEVAEFYR---SKDRAAMAAGRPTTNEEWIDY-PD 359

Query: 444 GTPLAVEVGLTPVHFSNGIYILTTINNISERKRIEAQRIEHMAELERINQELDRFAYIAS 503
           G  + +E    P+H + G     T+  +    R   +R     +L R   +L+    +A+
Sbjct: 360 GRHVLLETIKAPIHENGG-----TLMGMVGISRDITRRSSAEEKLRRALSDLEMVTTVAA 414

Query: 504 HDLKSPLRGIEQLTTWLSEDLVDNTNENVQKYLGLIQNRIQRMVRLLDGLLTFSRIGRVD 563
           HDL+ P R I      L         E+  +Y+        RM   L GL  ++ + +  
Sbjct: 415 HDLQEPARTIASFLQLLELRYRGKLGEDADQYIAYAVAGAHRMRDQLAGLQEYTLVDQGP 474

Query: 564 NEMVEVDSRQLVEDMFALVAPP--QGFELVLEGDFPHFKTVKTLLELVVRNLISNAIK-- 619
                VD+ ++V  +     P   +   +V  G  P  +     L+ + ++LI NA+K  
Sbjct: 475 AFFPPVDAAEIVAAILEAWKPKLDEAGAVVSLGSLPVVQANPDQLKALFQHLIGNALKFR 534

Query: 620 HHDRGFGVLKVLCETKNTYYWFSVVDDGPGISSEFQLKVFEMFQTLRPRDEVEGSGLGLS 679
           H DR   +         T+  FSV D+G G+   +  K+F +FQ L P    EG+G+GL+
Sbjct: 535 HPDRPPEIRLSAAHQGGTWE-FSVTDNGIGVEEAYWDKIFMVFQRLHPLSLYEGTGIGLA 593

Query: 680 LVKKTVDSLGGKIQLESV-GRGCCFRFSWP 708
           + +K V+  GG+I++ SV  +G  F F+ P
Sbjct: 594 ICRKIVERHGGRIRVVSVPNQGSTFSFTIP 623