Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1012 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  117 bits (292), Expect = 4e-30
 Identities = 97/359 (27%), Positives = 167/359 (46%), Gaps = 12/359 (3%)

Query: 356  NEKRFRLIIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLPETLREIH 415
            +E+  + ++ A+     ++   G I   N      F  T  ++ G S    LP+ L E  
Sbjct: 658  SEELSKTLLNATIDGALLMTPEGRILATNEALAARFATTPAQMPGTSFFDWLPQPLAERR 717

Query: 416  QQHLSHYLVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLTPVHFSNGIYILTTINNISERK 475
            +   +  L     + +   D+  G   D     V+ G   +       +     +++E++
Sbjct: 718  RDQFAQVLAD--RRPLHSVDERGGAIFDNRIYPVQDGDGEIR-----RMAVFSRDVTEQR 770

Query: 476  RIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSEDLVDNTNENVQKY 535
              +    + +A+L R N EL++FAY+ASHDL+ PLR I      L     D  ++   + 
Sbjct: 771  HAQKAIEKALADLARSNAELEQFAYVASHDLREPLRAITGHLQLLQRLAKDKLDDYALES 830

Query: 536  LGLIQNRIQRMVRLLDGLLTFSRIGRVDNEMVEVDSRQLVEDMFA--LVAPPQGFELVLE 593
            L    +  +RM  L+  LL +SRIG  D EM ++D  +++ D  +    A  +G   V  
Sbjct: 831  LLFAVDGARRMDLLIRDLLDYSRIGHADREMEDLDLGEVIADALSNLSAAIAEGHATVTT 890

Query: 594  G-DFPHFKTVKTLLELVVRNLISNAIKHHDRGFGVLKVLCETKNTYYW-FSVVDDGPGIS 651
                PH    +  L  + +NLI NA+K+ +        L   +    W  S+ D+G GI 
Sbjct: 891  ATGMPHAHGNRMELTRLFQNLIGNALKYRNPERPPEVELRAVRVGGAWDISIRDNGIGIE 950

Query: 652  SEFQLKVFEMFQTLRPRDEVEGSGLGLSLVKKTVDSLGGKIQLES-VGRGCCFRFSWPI 709
             E+  ++F +FQ L  R + EG+G+GL++ +K VD  GG I++ES  G+G  F  + P+
Sbjct: 951  PEYFNRIFMIFQRLHGRGQYEGTGIGLAVCRKIVDRHGGSIRVESEPGKGSTFTVTLPV 1009



 Score = 36.2 bits (82), Expect = 8e-06
 Identities = 46/213 (21%), Positives = 90/213 (42%), Gaps = 39/213 (18%)

Query: 298 VWRIDVSSESRFISRAEQTRSVWLQVIGCAFILALFYAVISMA--RNRYQESM-LTAELI 354
           +W I   SE  +++   +   + + V     +L++  A + +   RNR+  +  L A  +
Sbjct: 295 LWVIVGLSEDDYLADWRRQALIMVAVAMGFSLLSVTVATLLLRSWRNRHAAARALEAAHV 354

Query: 355 ANEK---RFRLIIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLPETL 411
             E+   R  LI+ ++   +  VD  G IT +N    R+ G++  E +G +++       
Sbjct: 355 QTEEARHRLELILASAGEGICGVDPEGRITFINPAARRMLGWSETEGVGLNLH------- 407

Query: 412 REIHQ----------------QHLSHYLVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLTP 455
            E+H                 Q L    +  + +++  R       +DGTP+ VE    P
Sbjct: 408 EEVHHHRADGSEFPAVACPVWQTLHDGNIRHVPRDVHWR-------RDGTPVTVEFTTAP 460

Query: 456 VHFSNG--IYILTTINNISERKRIEAQRIEHMA 486
           +   NG     +T   +I+ R R E++   ++A
Sbjct: 461 I-IQNGRVAGAVTLFRDIARRIRAESEAARNLA 492