Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 548 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  127 bits (318), Expect = 2e-33
 Identities = 123/485 (25%), Positives = 223/485 (45%), Gaps = 45/485 (9%)

Query: 238 LFRMNDLMQGIMG---KRFSGIKLAIYDGSEANRTHLMFSSDPKLPSSKDVFYQSQLETM 294
           L  ++  ++G++G   +   G+  A + GS+ +R  L+ + +    S  D  Y+ +L   
Sbjct: 90  LLMVSRSVEGLLGYTVEEVLGLDSAFFHGSDDSRPQLVAALEAAGGSIID--YELRLRHK 147

Query: 295 EGQVWRIDVSSESRFISRAEQTRSVWLQVIGCAFILALFYAVISMARNRYQESMLTAELI 354
           +G++  +  S+ SRF   A+  R                  V+ +   R +  +   E  
Sbjct: 148 DGRI--LWASTSSRFYLDAQGRRGGT-------------EGVVRLIEERKRTELYIRE-- 190

Query: 355 ANEKRFRLIIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLPETLREI 414
            N+   + +++AS  A+ +    G +  VN      FG    EL G  +  + P  + + 
Sbjct: 191 -NQALIQAMLDASSDAIMLFRPDGTLLAVNEVMAARFGRRATELTGSCLWDMFPPDVAKA 249

Query: 415 HQQHLSHYLVHPIAKN-MSMRDDLLGCCKDGTPLAVEVGLTPVHFSNGI--YILTTINNI 471
            ++ ++  +    A + +  R DL           ++  + PV   +G+   +     +I
Sbjct: 250 REEAVTRVVQTGEAIHYLDRRGDLY----------LDNSIYPVPGVDGVPDKVAVYSRDI 299

Query: 472 SERKRIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSEDLVDNTNEN 531
           + +   E +   ++AELER N EL++FAY+ASHDL+ PLR I    + L          +
Sbjct: 300 TAQTLAEQKVATYLAELERSNAELEQFAYVASHDLREPLRMISSYLSLLERRYAPKLEGD 359

Query: 532 VQKYLGLIQNRIQRMVRLLDGLLTFSRIGRVDNEMVEVDSRQLVEDMFALVAPP-----Q 586
             ++L   ++  QRM RL+  LL FSRI R  + +V +D+  L+      +AP       
Sbjct: 360 GLEFLAFARDGAQRMDRLVLDLLDFSRIQRKGSPIVAMDADPLLHQALRHLAPAIEESGG 419

Query: 587 GFELVLEGDFPHFKTVKTLLELVVRNLISNAIKHH--DRGFGVLKVLCETKNTYYWFSVV 644
             E+   G+          +  + +NLI NA+K+   DR   ++KV  +     +   V 
Sbjct: 420 AVEVAEGGEAVRVMGDPDQVIRLFQNLIGNAVKYRAPDRA-PLVKVSWQRTGGEWECVVA 478

Query: 645 DDGPGISSEFQLKVFEMFQTLRPRDEVEGSGLGLSLVKKTVDSLGGKIQLESV-GRGCCF 703
           D+G GI  ++  ++F +FQ L   D   G+G+GL++ KK V+  GG+I +ESV  +G  F
Sbjct: 479 DNGIGIDPQYFERIFGIFQRLHTPDAYAGTGIGLAICKKIVERHGGRIWVESVPDQGSVF 538

Query: 704 RFSWP 708
            F+ P
Sbjct: 539 HFTLP 543



 Score = 32.3 bits (72), Expect = 6e-05
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 346 ESMLTAELIANEKRFRLIIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLG 400
           E+ +  ++ A E   R I++  P   +  D  G + +V+   E L GYT EE+LG
Sbjct: 57  ETQVERQVQARED-LRAILDNMPDIFYRTDTEGRLLMVSRSVEGLLGYTVEEVLG 110