Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 607 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  146 bits (369), Expect = 3e-39
 Identities = 105/365 (28%), Positives = 187/365 (51%), Gaps = 14/365 (3%)

Query: 354 IANEKRFRLI---IEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLPET 410
           + N  R  ++   +E SP ++ + D    I  VN+   R+ GY+ +E++GR+  +L  +T
Sbjct: 245 VENAHRMHMLNRAVEQSPVSIVITDLNAEIQYVNSSFLRITGYSMDEVIGRNPRILRSDT 304

Query: 411 LREIHQQHLSHYLVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLTPVHFSNGIYI--LTTI 468
                 Q++   L    +       +L+   K G     +  + P+    G+    L   
Sbjct: 305 TPPETFQNMWAAL----SAGEKWEGELINRRKSGELYWEQATIQPIQNIEGVITNYLAVK 360

Query: 469 NNISERKRIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSEDLVDNT 528
           ++I+E+K+  A+  E + EL R N+EL++FAY+ASHDL+ PLR I      L + L  + 
Sbjct: 361 SDITEQKKAAAKLAELVEELRRSNEELEQFAYVASHDLRQPLRMISAYLALLEKKLSASF 420

Query: 529 NENVQKYLGLIQNRIQRMVRLLDGLLTFSRIGRVDNEMVEVDSRQLVED---MFALVAPP 585
           +++ + + G   +  +R+ R++  LL +SRIGR+   M  V   ++V +      +    
Sbjct: 421 DQDARDFFGFAIDGARRLDRMIVDLLEYSRIGRITAPMEPVSLGEVVSNALRYLEVAVAE 480

Query: 586 QGFELVLEGDFPHFKTVKTLLELVVRNLISNAIKHHDRGFGV-LKVLCETKNTYYWFSVV 644
            G E+V+    P        L  + +NLI+NAIK+   G    ++VLC  +   +   V 
Sbjct: 481 SGSEVVVPDGLPTISGDGGELVRLFQNLIANAIKYMPEGRQPRIEVLCRAQGAEWVVGVK 540

Query: 645 DDGPGISSEFQLKVFEMFQTLRPRDEVEGSGLGLSLVKKTVDSLGGKIQLES-VGRGCCF 703
           D+G GI  +   +VF +FQ L  R++ EG+G+GL++ +K  +  GG+I +ES +G G  F
Sbjct: 541 DNGIGIPPDDLKRVFGIFQRLVAREQFEGTGIGLAVCRKIAEHHGGRIWVESEMGVGSTF 600

Query: 704 RFSWP 708
             ++P
Sbjct: 601 LVAFP 605