Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1117 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  103 bits (258), Expect = 4e-26
 Identities = 101/389 (25%), Positives = 186/389 (47%), Gaps = 26/389 (6%)

Query: 340 ARNRYQESMLTAELIANEKRFRLIIEASPSALFMVDKTGVITLVNTQGERLFGYTREELL 399
           A  R + S    E +A  +R   I+E+    +  +D  G  T VN    +L  +   EL+
Sbjct: 330 AEERLKASQAEIERLA--ERNNSILESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELV 387

Query: 400 GRSINMLLPETLREIHQQHLSHYLVHPIAKNMSMRDDLLGCCK-DGTPLAVEVGLTPV-H 457
           G  I   LP    ++H     + ++  + +  S+RDD     + DG+PL VE   +PV  
Sbjct: 388 GSDI---LPLMALDLHTAEKLYQILLRLTE--SIRDDTASFKRRDGSPLPVEYIASPVMD 442

Query: 458 FSNGIYILTTINNISERKRIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLT 517
             N + ++    +I++R+ +E Q  E     E  N+    F    SH++++P+ G+  +T
Sbjct: 443 RGNQVGVVLGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMT 502

Query: 518 TWLSEDLVDNTNENVQKYLGLIQNRIQRMVRLLDGLLTFSRI--GRVDNEMVEVDSRQLV 575
             L   L    +E  + +   I++  + ++ +++ +L FS++  G++D +  E +   LV
Sbjct: 503 GLL---LDTRLSEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLV 559

Query: 576 EDMFALVAP---PQGFELVLEGDFPHFKTVKT---LLELVVRNLISNAIKHHDRGFGVLK 629
           E +  ++AP    +G E+    D      V++    L  V+ NL  NA+K  ++G   ++
Sbjct: 560 ESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIE 619

Query: 630 VLC---ETKNTYYWFSVVDDGPGISSEFQLKVFEMFQTLRPRD--EVEGSGLGLSLVKKT 684
           V             F V D G GI  E Q ++F MF  +         G+GLGL++ ++ 
Sbjct: 620 VSLLDGPDAPAMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRL 679

Query: 685 VDSLGGKIQLES-VGRGCCFRFSWPIHIV 712
            + +GG++ +ES VGRG  F  + P+ ++
Sbjct: 680 AELMGGEVGVESAVGRGSRFWITLPLELL 708