Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 840 a.a., PAS domain-containing sensor histidine kinase from Magnetospirillum magneticum AMB-1

 Score =  116 bits (290), Expect = 5e-30
 Identities = 98/368 (26%), Positives = 177/368 (48%), Gaps = 33/368 (8%)

Query: 356 NEKRFRLIIEASPSALFM-VDKTGVITLVNTQGERLFGYTREELLGRSI----------- 403
           +E++F     ASP A+ + + + G    +N     + GY+R +L+G +            
Sbjct: 483 SEEKFAKAFRASPDAMVISLTEDGRYIDLNDAFADMLGYSRLDLMGHTALGMGVWADPED 542

Query: 404 NMLLPETLREIHQQHLSHYLVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLTPVHFSNGIY 463
              L E  R   Q  + ++      KN  + D L+   K             V   +   
Sbjct: 543 RARLVEAARRDGQ--VVNFETRLRRKNGEVFDTLIAVQK-------------VVLDDLDC 587

Query: 464 ILTTINNISERKRIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSED 523
           +L    ++SERK +EA+  E +  L+  N+EL++FAY+ SHDL+ PLR I      +   
Sbjct: 588 LLFICRDVSERKAMEARSRELLVRLDASNKELEQFAYVTSHDLQEPLRMIAGYAQLIERR 647

Query: 524 LVDNTNENVQKYLGLIQNRIQRMVRLLDGLLTFSRIGRVDNEMVEVDSRQLVEDMFALV- 582
                +++  +++  + +  +RM  ++  LL +SR+ R+  +       ++++D+ A + 
Sbjct: 648 YRGRLDDDADEFIAFLVDGAKRMQAMIRDLLEYSRVERLGGQFESFGMGEVLDDVMANLG 707

Query: 583 -APPQGFELVLEGDFPHFKTVKTLLELVVRNLISNAIKHH--DRGFGVLKVLCETKNTYY 639
            A  +    +  G  P     ++ +  +++NLI NA+K+   DR   V+ V  E     +
Sbjct: 708 AALTETGGRIEVGPMPQVTADRSQMLRLLQNLIGNALKYRSPDRQ-PVVTVTAEPGAGGW 766

Query: 640 WFSVVDDGPGISSEFQLKVFEMFQTLRPRDEVEGSGLGLSLVKKTVDSLGGKIQLES-VG 698
             SV D+G GI   +  ++F +FQ L  R+  +G+G+GL++ KK V+  GG+I +ES   
Sbjct: 767 VISVADNGIGIEPAYFDRIFLVFQRLHTREHYDGTGIGLAICKKIVERHGGRIWVESEPD 826

Query: 699 RGCCFRFS 706
           RG  FRFS
Sbjct: 827 RGSVFRFS 834



 Score = 40.0 bits (92), Expect = 5e-07
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 325 GCAFILALFYAVISMARNRY--QESMLTAELIANEKRFRLIIEASPSALFMVDKTGVITL 382
           G   +LAL    ++M  +R   +   +   L A+E R+R++ E SP  +F  D  G    
Sbjct: 324 GATLLLALVTFGLAMVSDRRLAERQRVQQALAASEARYRMLTEHSPVGVFQADAEGTCLY 383

Query: 383 VNTQGERLFGYTREELLG 400
            N +   L G  R ELLG
Sbjct: 384 ANERWLELAGRGRSELLG 401