Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 863 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  133 bits (334), Expect = 4e-35
 Identities = 114/371 (30%), Positives = 180/371 (48%), Gaps = 31/371 (8%)

Query: 361 RLIIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLPETLREIHQQ--H 418
           R +++ + S++      G I L N   ER  GY  EE++GR       ++  E+ Q+   
Sbjct: 493 RAVLDGAGSSIVATAVDGTILLFNPTAERWLGYGAEEVVGRMTPAAFHDS-EEVSQRVAR 551

Query: 419 LSHYL---VHP-----IAKNMSMRDDLLG----CCKDGTPLAVEVGLTPVHFSNGIY--I 464
           LS  L   V P     IAK +       G      KDG+   V + +T ++   G+    
Sbjct: 552 LSQELGREVEPGFECFIAKVLDSGKPDSGEWTYVRKDGSRFRVLLTVTALYDEEGVLSGF 611

Query: 465 LTTINNISERKRIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSEDL 524
           L    +IS R  IE        EL+R N EL+ FAY+ASHDL+ PLR I      L   L
Sbjct: 612 LGVAQDISARLSIEK-------ELKRSNAELENFAYVASHDLRQPLRMISSYIALLQRRL 664

Query: 525 VDNTNENVQKYLGLIQNRIQRMVRLLDGLLTFSRIGRVDNEMVEVDSRQLVE----DMFA 580
            D  +++ Q ++G      QRM  ++  LL +SR+GR       V+  ++V+    ++ A
Sbjct: 665 GDALDQDCQDFIGFAVGGAQRMDHMITDLLQYSRLGRSGTPPAAVNLAEVVKLAQANLGA 724

Query: 581 LVAPPQGFELVLEGDFPHFKTVKTLLELVVRNLISNAIKHHDRG-FGVLKVLCETKNTYY 639
           L+        V EG  P  +  +  LE + +NLISNA+K   +G   ++++        +
Sbjct: 725 LIEETGAAVTVAEG-LPTVRGNEVELERLFQNLISNAVKFQAQGRLPLVEITWRATADEW 783

Query: 640 WFSVVDDGPGISSEFQLKVFEMFQTLRPRDEVEGSGLGLSLVKKTVDSLGGKIQLES-VG 698
             SV D+G GI    + K+F++FQ L   D+  GSG+GL+  +K  +  GG+I +ES  G
Sbjct: 784 IISVRDNGIGIDEAGRQKLFQIFQRLVRLDQYPGSGIGLASCRKIAEHHGGRIWVESQPG 843

Query: 699 RGCCFRFSWPI 709
            G  F+ + P+
Sbjct: 844 EGSTFQVALPV 854