Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 668 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  154 bits (388), Expect = 2e-41
 Identities = 143/560 (25%), Positives = 253/560 (45%), Gaps = 42/560 (7%)

Query: 163 NQRAFGFDMCSEATRRSAILKAITSGLPKVSGKVTLVQETPENTQAGVLMYVPLYRGQPM 222
           N+ A G D  ++  +   + +AITS  P V+G V L+Q       A ++  VP+Y   P 
Sbjct: 130 NRAALGVDYRTKPDQWPTVQQAITSRKPVVAGPVNLIQGG-----AALIGRVPVYLPDPA 184

Query: 223 TEVERMQQAIGVVYALFRMNDLMQGIMGKRFSGIKLAIYDGSEANRTHLMFSSDPKLPSS 282
               R+   I VV  + ++   +   +  R   ++LA+       R+  M   D      
Sbjct: 185 GGESRLFGLISVVIDMPKV--FLASGLDARLLPMELALRGRDGLGRSGEMIWGD------ 236

Query: 283 KDVFYQSQLE---TMEGQVWRIDVSSESRFISRAEQTRSVWLQVIGCAFILALFYAVISM 339
           + VF +S +E   T+    W +    +  + +   Q R      +G    L    A    
Sbjct: 237 EAVFLRSPVEMEVTLPDGTWAMAAIPKGGWAASDGQLRVT--AGMGAVLFLLTVLASFGW 294

Query: 340 ARNRYQESMLTAELIANEKRFRLIIEASPSALFMVDKTGVITLVNTQGERLF-GYTREEL 398
           A +  ++      +  +E+R+R ++E +P A+ +V + GVI   NTQ  R       E L
Sbjct: 295 AFHVRRQQRAVRLVAESEERYRALMETAPMAV-VVHRDGVILFANTQATRTVRAPAGETL 353

Query: 399 LGRSI-NMLLPETLREIHQQHLSHYLVHPIAKNMSMRDDLLG-----CCKDGTPLAVEVG 452
           +GR + + + P+   ++  +         +   M+  + ++G       +DG  +  EV 
Sbjct: 354 IGRKVLDFVFPDDRADVAAR---------MGAAMADPETVVGGPVRYVARDGRVVECEVI 404

Query: 453 LTPVHFSNGIYILTTINNISERKRIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRG 512
            T V       +L+ + ++S+R + E +R   +  L+R N++L +FAYIASHDL+ PLR 
Sbjct: 405 TTRVTLDGEPAVLSVVLDVSQRNQAERERERLLESLQRSNEDLQQFAYIASHDLQEPLRN 464

Query: 513 IEQLTTWLSEDLVDNTNENVQKYLGLIQNRIQRMVRLLDGLLTFSRIGRVDNEMVEVDSR 572
           +      L        +++   ++       +RM  ++  LL +S + R D E   VDSR
Sbjct: 465 VAGYVQLLGRRYRGRLDKDADDFIAFAVQGTKRMQEMIANLLDYSLLHREDGEPACVDSR 524

Query: 573 QLVEDMFA---LVAPPQGFELVLEGDFPHFKTVKTLLELVVRNLISNAIKHHDRGFGV-- 627
             +++  A         G  + + G  P     +  L  +  NLI NAIK+  R   V  
Sbjct: 525 GPLDEALADLGAAMDESGAVVEVVGVMPVVLARRVELARIFLNLIGNAIKYR-RADTVPR 583

Query: 628 LKVLCETKNTYYWFSVVDDGPGISSEFQLKVFEMFQTLRPRDEVEGSGLGLSLVKKTVDS 687
           +++        + FSV D+G G+   +  ++F +FQ L  R+  +G+G+GL++ +K V  
Sbjct: 584 IRIFARRDGLTWVFSVADNGIGMEPAYLDRIFTLFQRLHSRETYDGTGIGLAICRKLVQH 643

Query: 688 LGGKIQLES-VGRGCCFRFS 706
            GG+I  ES  G+G  F FS
Sbjct: 644 NGGRIWAESEPGQGSTFHFS 663