Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 754 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  114 bits (284), Expect = 2e-29
 Identities = 109/431 (25%), Positives = 198/431 (45%), Gaps = 36/431 (8%)

Query: 281 SSKDVFYQSQLETMEGQVWRIDVSSESRFISRAEQTRSVWLQVIGCAFILALFYAVISMA 340
           + +D+ ++++  T  G++W ++VS+   + +  +    V+L+ I                
Sbjct: 335 AGQDLRFETRHRTRNGEIWDVEVSTS--YFAGGDGRLFVFLRDIS--------------- 377

Query: 341 RNRYQESMLTAELIANEKRFRLIIEASPSALFMVDKT-GVITLVNTQGERLFGYTREELL 399
             R ++  + AE   +E+RFR + E      ++ D+       ++    RL+G+  E L+
Sbjct: 378 -ERKRDERVLAE---SERRFREMAETIDQVFYVADQDYSRFHYISPAFLRLWGHAPEVLM 433

Query: 400 GRSINMLLPETLREIHQQHLSHYLVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLTPVH-- 457
                 L  + +    +  + + L   I       D  +    DG  + +      V   
Sbjct: 434 AEP--SLWRDWVHPEDRDGVMNLLAARIGSGEYAADFRI-IRPDGEIVWLHAKAFEVANP 490

Query: 458 FSNGIYILTTINNISERKRIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLT 517
            S   Y+L    +I+  K IEA+  +    LER N EL+ +AY+ASHDL+ PLR I   +
Sbjct: 491 TSGQPYVLGFHTDITMAKSIEAELRDKNQALERSNAELEAYAYVASHDLREPLRNITAFS 550

Query: 518 TWLSEDLVDNTNENVQKYLGLIQNRIQRMVRLLDGLLTFSRIGRVDNEMVEVDSRQLVE- 576
           T L   L    ++  Q++L ++ +   RM  L+  LL  SRIGR + +M  V   +L++ 
Sbjct: 551 TLLRRRLEGRLDDEEQEFLKIVTDAANRMDCLVRDLLELSRIGRNERDMHLVSLSELMQA 610

Query: 577 ---DMFALVAPPQGFELVLEGDFPHFKTVKTLLELVVRNLISNAIKHHDRGFGVLKVLCE 633
               + + +   Q  ++ +    P        L  V+ NL  NAIK+   G   + V CE
Sbjct: 611 AKSSLRSQMEAAQA-DISITSPLPVIMGNDDELYRVLLNLFGNAIKYRGEGPVHIAVHCE 669

Query: 634 TKNTYYW-FSVVDDGPG--ISSEFQLKVFEMFQTLRPRDEV-EGSGLGLSLVKKTVDSLG 689
            +    W  ++ D+G G  +   ++ ++F +FQ L  RDE   G+G+GL + +K ++  G
Sbjct: 670 AEGPELWRMTIADNGIGMELGKGYEERIFGLFQRLHQRDEYGGGTGIGLPVCRKIIERHG 729

Query: 690 GKIQLESVGRG 700
           G+I  E+ G G
Sbjct: 730 GRIWAETDGPG 740



 Score = 56.2 bits (134), Expect = 6e-12
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 8/158 (5%)

Query: 349 LTAELIANEKRFRLIIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLP 408
           +T  L  +EK +R I+E S    +M D  G +  VN       GY+RE+LL  SI     
Sbjct: 260 MTRALHDSEKHYRAIVETSSDGFWMTDNRGQLLEVNHAYAARSGYSREQLLSMSI----- 314

Query: 409 ETLREIHQQHLSHYLVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLTPVHFSNGI-YILTT 467
           + L  I     +H  +  +     +R +     ++G    VEV  +  +F+ G   +   
Sbjct: 315 QDLEAIETDDATHARIAAVMAGQDLRFETRHRTRNGEIWDVEVSTS--YFAGGDGRLFVF 372

Query: 468 INNISERKRIEAQRIEHMAELERINQELDRFAYIASHD 505
           + +ISERKR E    E       + + +D+  Y+A  D
Sbjct: 373 LRDISERKRDERVLAESERRFREMAETIDQVFYVADQD 410