Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 668 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  133 bits (335), Expect = 2e-35
 Identities = 96/360 (26%), Positives = 175/360 (48%), Gaps = 8/360 (2%)

Query: 357 EKRFRLIIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLPETLREIHQ 416
           ++   LI+ A+   +  +D  G +T +N     + G+  E+ +GR+++     +  +   
Sbjct: 308 KREAELILAAAGEGICGIDIQGRVTFMNPAARSMLGWLHEDPIGRNLHAANHHSRPDGAA 367

Query: 417 QHLSHY-LVHPIAKNMSMRDDLLGCCK-DGTPLAVEVGLTPVHFSNGIY-ILTTINNISE 473
              S   + H +A   +         + +GT   VE+  T +    G+   +    +IS+
Sbjct: 368 YPGSECPIAHTLADGQTREVQGETFWRLNGTQFPVEMIATGLVEDGGVKGAVLMFRDISD 427

Query: 474 RKRIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSEDLVDNTNENVQ 533
           R   E        EL R N +L++FAY+ASHDL+ PLR +    + L        +++ +
Sbjct: 428 RLASEQALKAQATELSRSNADLEQFAYVASHDLREPLRQVASFVSLLERRYGPTLDDDAR 487

Query: 534 KYLGLIQNRIQRMVRLLDGLLTFSRIGRVDNEMVEVDSRQLVEDMFA---LVAPPQGFEL 590
            Y+   +   +RM RL+  LL FSRIG     + +V+   ++++  A    V    G ++
Sbjct: 488 DYITYAREGAKRMDRLIIDLLDFSRIGHHSQAVQQVNLGSVIDEAIANLGTVIVEHGAQV 547

Query: 591 VLEGDFPHFKTVKTLLELVVRNLISNAIK-HHDRGFGVLKVLCETKNTYYWFSVVDDGPG 649
               + P    V+  +  + +NLI NA+K HH     ++++     +  +  SV+D+G G
Sbjct: 548 DRAAEMPVLGLVRDDMVRLFQNLIGNALKYHHPERTPIVRIAARRDDEGWVVSVIDNGLG 607

Query: 650 ISSEFQLKVFEMFQTLRPRDEVEGSGLGLSLVKKTVDSLGGKIQLE-SVGRGCCFRFSWP 708
           I  +F  ++F +FQ L  RD+ EG+G+GL++ KK V+  GG+I +E + G G  F    P
Sbjct: 608 IDPQFSERIFGIFQRLHTRDKFEGTGIGLAICKKIVERAGGRIWVEPAEGGGSVFNVRLP 667