Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 386 a.a., PAS domain-containing sensor histidine kinase from Magnetospirillum magneticum AMB-1

 Score =  146 bits (369), Expect = 2e-39
 Identities = 113/373 (30%), Positives = 182/373 (48%), Gaps = 15/373 (4%)

Query: 345 QESMLTAELIANEKRFRLIIEASPSALFMVDKT-GVITLVNTQGERLFGYTREELLGRSI 403
           ++S + A L   E +F  +  A P  + +  ++ G    VN   ER+ G+++ E++GR+ 
Sbjct: 20  RQSDIEAVLRRTEAKFSTVFRACPDLIAITARSSGRFIEVNDAFERIMGWSKSEVIGRTS 79

Query: 404 NMLLPETLREIHQQHLSHYLVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLTPVHFSNGIY 463
             L     R+   + L+        +N  +R       K G      + L     S    
Sbjct: 80  ADLETWESRDERDRMLAALGESSRLENFEVRFRR----KSGEVFTALISLEATDLSGEPS 135

Query: 464 ILTTINNISERKRIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSED 523
           ++    +ISERK  E        ELER N EL+RFAY+A+HDL  P R I      L   
Sbjct: 136 LIFVARDISERKAEEMVLRRTAEELERSNMELERFAYVAAHDLLEPCRTICSFAQMLDRK 195

Query: 524 LVDNTNENVQKYLGLIQNRIQRMVRLLDGLLTFSRIGRVDNEMVEVD----SRQLVEDM- 578
             D  ++  ++YL  +     RM  L+ G+L +SR G    +MVEVD    + ++V D+ 
Sbjct: 196 YADILDDEGREYLDFLVGGALRMRELIQGVLGYSRAGVAAAQMVEVDLGRAAAEVVSDLG 255

Query: 579 FALVAPPQGFELVLEGDFPHFKTVKTLLELVVRNLISNAIKHHDRGFGV-LKVLCETKNT 637
            AL A   G E+   G  P  +     L  ++ NLI N +K H  G    ++V C  ++ 
Sbjct: 256 SALQARGGGVEV---GPLPVVRGDPAQLRQLLGNLIGNGVKFHAEGTSPRVRVFCGNRDG 312

Query: 638 YYWFSVVDDGPGISSEFQLKVFEMFQTLRPRDEVEGSGLGLSLVKKTVDSLGGKIQLES- 696
            +  +V D+G GI+ E+Q  +F +F+ L   D   G+G+GL++ ++ VD+ GG+I +ES 
Sbjct: 313 EWCVTVEDNGIGIAPEYQDDIFGIFRRLHGPDRYSGTGIGLAVARRIVDAHGGRIWVESE 372

Query: 697 VGRGCCFRFSWPI 709
            G G  FRF+ P+
Sbjct: 373 PGWGARFRFTLPM 385