Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 795 a.a., PAS domain-containing sensor histidine kinase from Magnetospirillum magneticum AMB-1

 Score =  152 bits (384), Expect = 6e-41
 Identities = 106/358 (29%), Positives = 182/358 (50%), Gaps = 12/358 (3%)

Query: 357 EKRFRLIIEASPSALFMVD-KTGVITLVNTQGERLFGYTREELLGRSINMLLPETLREIH 415
           E+ +      +P+   ++D K+G IT  N      +GY  + L   +I  +   +  EI 
Sbjct: 432 EELYSQSFHRNPAIKLLIDPKSGAITDANDSAALFYGYPADVLKHMNIQDINVASAAEI- 490

Query: 416 QQHLSHYLVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLTPVHFSNGIYILTTINNISERK 475
            +H    + +   K +  R  L      G    VEV  +P+H     Y+ + + ++S+R 
Sbjct: 491 -EHEMAAVENEGRKFLRFRHRL----SSGDIRDVEVYSSPLHVGGRAYLSSIVVDVSDRN 545

Query: 476 RIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSEDLVDNTNENVQKY 535
           R EA+     AEL R N EL++FAY+ASHDL+ PLR +    T L   L +  +E+ +++
Sbjct: 546 RFEAELQAKTAELARSNAELEQFAYVASHDLRQPLRMVTSYVTLLERHLGETLDESSREF 605

Query: 536 LGLIQNRIQRMVRLLDGLLTFSRIGRVDNEMVEVDSRQLVEDMFA---LVAPPQGFELVL 592
           +G   + ++RM  L+ GLL +SR+GR    + ++D  ++V D  A   L        +++
Sbjct: 606 IGYTISGVRRMDALIKGLLDYSRVGRGGETLSDLDLEEVVADSCANLGLTGSSDEATVLV 665

Query: 593 EGDFPHFKTVKTLLELVVRNLISNAIKH-HDRGFGVLKVLCETKNTYYWFSVVDDGPGIS 651
           E   P    + + L  + +NLI NA+K+ H      +++    +   +  +V D+G GI 
Sbjct: 666 EHPLPRILGISSELIRLFQNLIGNAVKYRHPERKPEIRLSSRRQGNEWIITVEDNGLGIG 725

Query: 652 SEFQLKVFEMFQTLRPRDEVEGSGLGLSLVKKTVDSLGGKIQLES-VGRGCCFRFSWP 708
           +E   ++F MFQ L    E EG+G+GL++ +K V + GG+I +ES  G G  F  + P
Sbjct: 726 AEHFERIFGMFQRLHAEGEFEGTGIGLAICRKIVTTHGGRIWVESEEGAGSRFMVALP 783



 Score = 36.2 bits (82), Expect = 6e-06
 Identities = 21/89 (23%), Positives = 38/89 (42%)

Query: 324 IGCAFILALFYAVISMARNRYQESMLTAELIANEKRFRLIIEASPSALFMVDKTGVITLV 383
           IG  F   L  A + + R   +       L A+E+ +R++++     +    +   +  V
Sbjct: 273 IGLLFSTVLLGAALQLERRERERRGAETALKASEESYRILVDDQDDLIHRYTQDTTLITV 332

Query: 384 NTQGERLFGYTREELLGRSINMLLPETLR 412
           N    R +G T + L+GR     LP+  R
Sbjct: 333 NRAYARFYGQTPDSLIGRKWIEFLPDEER 361