Pairwise Alignments

Query, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 593 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  202 bits (514), Expect = 4e-56
 Identities = 125/389 (32%), Positives = 212/389 (54%), Gaps = 12/389 (3%)

Query: 331 ALFYAVISMARNRYQESMLTAELIAN-------EKRFRLIIEASPSALFMVDKTGVITLV 383
           ++F   IS++  + ++ +  +  I N       E +F+ ++E++P A+ + DK G I L 
Sbjct: 205 SVFPVEISLSPLKTEDGLFVSAAIRNITDRKKAENKFKGLLESAPDAIILADKDGNIQLA 264

Query: 384 NTQGERLFGYTREELLGRSINMLLPETLREIHQQHLSHYLVHPIAKNMSMRDDLLGCCKD 443
           N Q   +FGY++ EL+G  I ML+P      H  H   +      + M+   +L G  K 
Sbjct: 265 NEQVVNIFGYSKSELIGNKIEMLVPMRYHHRHTNHRDEFFHTAETRPMASGLELSGVRKS 324

Query: 444 GTPLAVEVGLTPVHFSNGIYILTTINNISERKRIEAQRIEHMAELERINQELDRFAYIAS 503
           G    VE+ L+P+   +G   +  I + SE+  ++ +  +   +L+  N+EL++FAY+AS
Sbjct: 325 GEEFPVEISLSPLETEDGALAIAVIRDTSEKAAVKKEMQDFNKKLQVKNKELEQFAYVAS 384

Query: 504 HDLKSPLRGIEQLTTWLSEDLVDNTNENVQKYLGLIQNRIQRMVRLLDGLLTFSRIGRVD 563
           HDL+ PL+ +   T +LSE+  ++ +E  +K +  I     RM +L+ GLL +SRIGR +
Sbjct: 385 HDLQEPLQTVMSFTEFLSENYGEHFDETGKKSMQYIMEATGRMRQLIKGLLDYSRIGR-E 443

Query: 564 NEMVEVDSRQLVEDM-FALVAPPQGFELVLEGD-FPHFKTVKTLLELVVRNLISNAIKHH 621
            + V VD   L+ D+   L +  +     +  D  PH K   T L L+ +NLI+N IK H
Sbjct: 444 RKPVMVDCNSLISDIKVDLSSQIKATNASIHADNLPHIKGNYTELRLLFQNLITNGIKFH 503

Query: 622 DRGFGVLKVLCETKNTYYW-FSVVDDGPGISSEFQLKVFEMFQTLRPRDEVEGSGLGLSL 680
             G      +  TK   +W F + D+G GI ++F+ ++F +FQ L  R+  +G+G+GL+ 
Sbjct: 504 QEGVPPKIQIGVTKKADHWLFCIKDNGIGIENKFKERIFIIFQRLHTRNTYDGTGIGLAH 563

Query: 681 VKKTVDSLGGKIQLES-VGRGCCFRFSWP 708
            +K V+  GGKI + S +G+G  F F+ P
Sbjct: 564 CQKIVELHGGKIWVHSELGKGSSFLFTVP 592



 Score = 88.6 bits (218), Expect = 8e-22
 Identities = 40/116 (34%), Positives = 69/116 (59%)

Query: 363 IIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLPETLREIHQQHLSHY 422
           ++E +P A+ +V+  G I L+N Q E  FGY +EEL+G  + +L+P+     H+Q+   Y
Sbjct: 123 LVETAPDAMVIVNSEGQIVLINAQTENQFGYNKEELIGSELEILIPDKYISKHKQNRKSY 182

Query: 423 LVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLTPVHFSNGIYILTTINNISERKRIE 478
              P  ++M    +L G  KDG+   VE+ L+P+   +G+++   I NI++RK+ E
Sbjct: 183 AKQPKPRSMGQGMELFGKRKDGSVFPVEISLSPLKTEDGLFVSAAIRNITDRKKAE 238



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 370 ALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLPETLREIHQ 416
           A+   D  G +   N    +LF Y R  LLG     L+ E   +  Q
Sbjct: 12  AILAFDLRGNVVYSNAASYKLFEYNRSSLLGMEYGALVHEAKMDFDQ 58