Pairwise Alignments

Query, 318 a.a., immunogenic-related protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 439 a.a., hypothetical protein from Methylophilus sp. DMC18

 Score = 47.0 bits (110), Expect = 8e-10
 Identities = 62/258 (24%), Positives = 101/258 (39%), Gaps = 20/258 (7%)

Query: 25  AAPAFINILTGGTSGVYYPIGVALSQLYGTGI--EGAKTSVQATKASVENLNLLQAGRGE 82
           A P  I I TG     Y     A + +YG  +  EG    ++ T    ENL LL+     
Sbjct: 43  APPRNIVIATGEADLNYN----AFAAIYGVYLKKEGIHLQIRKTAGDDENLRLLKDPDSN 98

Query: 83  LALALGDSVAAAYQGDADAGFKKPLDKVRVLAAAYPNYIQIVASKESGIKTLADLKGKRI 142
           + +A      A  +G   AG       +  L + Y   + I    ++    L+ LKGKRI
Sbjct: 99  VDIAFIQDGMAHSEG---AG------SLLSLGSLYYQPVWIFCRGKTETTHLSALKGKRI 149

Query: 143 SVGAPKSGTELNARAIFKAAGLSYEDMGKVEFLPYAESVELIKNRQLDATLQSSGLGMAA 202
            VG P SG+   A  +   +G++  +   V  +   E+V  +++ +LDA         + 
Sbjct: 150 GVGYPGSGSHFLANTLLTESGINASNSTLVT-IGAEEAVAALQSGKLDAAFFVDVANSSL 208

Query: 203 IRDLATTMPINFVEVPEDVILKINNPAYQHGVIPASTYE----GQTADVSTVAIQNLFVT 258
           +R+L     +  V +              H V+P    +      + DV  VA     V 
Sbjct: 209 VRELIADKHLTMVSMDTAEAFSRKFAFMHHLVLPEGAMDLARNIPSHDVHLVAPTATLVI 268

Query: 259 QTGVSDDLAYQMTKLMFE 276
           +  +   L Y M K++ E
Sbjct: 269 KDSMHPALIYLMMKVIAE 286