Pairwise Alignments

Query, 856 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 820 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  328 bits (842), Expect = 6e-94
 Identities = 211/563 (37%), Positives = 316/563 (56%), Gaps = 31/563 (5%)

Query: 300 IYQQKERGKITLESIAEAVILTDIEAKVIYMNPKAETLLEVASSNAVGESLASLLKAGEQ 359
           + Q+KER +ITLESI + VI TD++  + YMNP AE L    S+ A G  LA+L    + 
Sbjct: 240 LQQEKERAQITLESIGDGVITTDVDGAITYMNPAAEALTHWNSAQAQGLPLAALFNLLDD 299

Query: 360 LNQA-----VFHCIRLGETMPQVAKIKLLTTMPRIIERSISNVL-----NHEKEIVGTVV 409
             Q      + H ++ G+        K   T+ R+   ++S  L         ++ G V+
Sbjct: 300 NAQPDGFTLIEHIVK-GQLSGGSEHSK---TIQRLDGSTVSVTLVGAPIRSTGKVTGAVL 355

Query: 410 VLRDITQEELLKHQLQKRANFDGITGLLNRQAFEEQL-----PEFASQARSLAVCYLDLE 464
           VL D+TQE      L  +A  D +TGL NR+ FE +L     P         A+ +LDL+
Sbjct: 356 VLHDMTQERQYIANLSWQATHDALTGLANRREFEFRLEQVLHPTAQQNGGRHALMFLDLD 415

Query: 465 QFKLINDSCGHTAGDRMLAMVARAIQSCLGPQELLARIGGDEFGLVICDRTALAVAQLLK 524
           QFKL+ND+CGH AGD +L  +   +QS L   + LAR+GGDEFG+++ +    AVA+ + 
Sbjct: 416 QFKLVNDTCGHAAGDELLRHICALLQSDLREGDTLARLGGDEFGILL-ENCPAAVAEKIA 474

Query: 525 QIIAQVSLQVLHD--KNCNYKVGLSIG-VAFGRAPYINAQELLKDADIACIAAKAKGTNQ 581
           + +   ++Q LH   K   +   +SIG V  G  P    +  L+ AD+AC  AK KG N+
Sbjct: 475 ESLRH-TVQNLHFVWKGRPFMTTVSIGLVHLGHTP-TTLETSLRAADMACYMAKEKGRNR 532

Query: 582 IHIYDDKDKELTYQRNAPKWAVRIAQAIEENELLLYYQPIRGLGASSKRQ-RMEVLLRIQ 640
           + +Y   D EL+ +     W  R+  A+EEN   LY Q I  LG ++     +E+LLR+ 
Sbjct: 533 VQVYHADDSELSLRFGEMAWVQRLHMALEENRFCLYAQEISPLGQTNGGDGHIEILLRLH 592

Query: 641 EPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAFLWLSLNSQ----LWQDHCISINLSGN 696
           +  GRI+ P  FI AAER+ LM  +D+ V+   F  ++   Q    L    C +INLSG 
Sbjct: 593 DEAGRIILPDSFIPAAERYGLMTSLDRWVVENVFKIINRCMQERPGLPMAMC-AINLSGI 651

Query: 697 SLGAEGMVEYIAKQQQIFDIPSQCVCFEITETTAIQNRHRGMEMLRQLRKLGFSFALDDF 756
           ++G +  + ++ ++   + IP   +CFEITET+AI N    +  + +L+ LG  F+LDDF
Sbjct: 652 TIGDDDFLGFLREKFHTYTIPPGMICFEITETSAIANLGSAIRFINELKALGCHFSLDDF 711

Query: 757 GSGFASYGYLRELPVDYVKIDGCFVKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQ 816
            +G +S+ YL+ LPVD++KIDG FVK++  +  + A+V+ I  +  VMG  T+AEFVE  
Sbjct: 712 CAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETP 771

Query: 817 EIIDRLQTIGINYAQGYAIGRPQ 839
           +I   L  IG++YAQGY I RPQ
Sbjct: 772 QIEQALLEIGVDYAQGYLIERPQ 794