Pairwise Alignments

Query, 856 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 637 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

 Score =  217 bits (552), Expect = 2e-60
 Identities = 168/568 (29%), Positives = 292/568 (51%), Gaps = 31/568 (5%)

Query: 292 RVNSLLARIYQQKER---GKITLESIAEAVILTDIEAKVIYMNPKAETLLEVASSNAVGE 348
           R N L   + + +ER        +   E V++TD +  ++++N     +   +  + +G 
Sbjct: 68  RANQLQQPLKENRERLRQAAAVFDCTREGVLVTDTKGLIVHVNRAFMEITGYSREDVMGR 127

Query: 349 SLASLLKAGEQLN---QAVFHCI-RLGETMPQV-AKIKLLTTMPRIIERSISNVLNHEKE 403
              SL K+G   +   Q +F  + R GE   ++  + K     P+   ++I  + + + +
Sbjct: 128 Q-PSLFKSGRHSSNFYQQMFQSLERTGEWSGEIWNRRKSGEIYPQW--QTIRVIHDDQGQ 184

Query: 404 IVGTVVVLRDITQEELLKHQLQKRANFDGITGLLNRQAF----EEQLPEFASQARSLAVC 459
           +   V V  DI+  +  +H+L   A+ D +T L NR  F    E+ L    +  R  A+ 
Sbjct: 185 VSHYVAVFSDISAIKDSEHELAHLAHHDPLTDLPNRLLFTDRAEQALASAQTHKRGCALL 244

Query: 460 YLDLEQFKLINDSCGHTAGDRMLAMVARAIQSCLGPQELLARIGGDEFGLVI--CDRTAL 517
            LDL+ FK+INDS GH  GD++L +V   +++  GP   LAR+GGDEF ++   C + A 
Sbjct: 245 LLDLDHFKIINDSLGHNVGDQLLKLVGERLKALFGPGVTLARLGGDEFAVLAESCPQVAQ 304

Query: 518 AVAQLLKQIIAQVSLQVLHDKNCNYKVGLSIGVAFGRAPYINAQELLKDADIACIAAKAK 577
           A A L ++++  +    + D +  + +  SIG++   +  ++A++LL++AD A   AK+ 
Sbjct: 305 A-AGLAQRMLDAMKQPFIFDGHQLF-ISASIGISLFPSDALSAEQLLRNADSALFKAKSA 362

Query: 578 GTNQIHIYDDKDKELT-YQRNAPKWAVRIAQAIEENELLLYYQPIRGLGASSKRQRMEVL 636
           G     +Y +   ELT + +N  + A  + +A+E+ EL +YYQP+  L   S+   +E L
Sbjct: 363 GREGYALYTE---ELTAHAQNRVEIASELRRALEQQELCVYYQPVHDLN-DSRLIGVEAL 418

Query: 637 LRIQEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAFL----WLSLNSQLWQDHCISIN 692
           +R Q P   ++ P +FI  AER  L+ +ID  V+ +A      WL+  + L     I+IN
Sbjct: 419 VRWQHPERGLVPPGEFIPIAERTGLIADIDAWVMNQACRQMCDWLAQGTPL---SFIAIN 475

Query: 693 LSGNSLGAEGMVEYIAKQQQIFDIPSQCVCFEITETTAIQNRHRGMEMLRQLRKLGFSFA 752
           +S        + E +A+      +    +  E+TE+  +++    +E L +LR+LG   A
Sbjct: 476 VSSRLFARRELYEQVAQVLHDTGLDPAFLELEVTESAVMEDPEVALEQLHRLRELGLRLA 535

Query: 753 LDDFGSGFASYGYLRELPVDYVKIDGCFVKNLAVNAKDYAIVKSIQDVCRVMGIETVAEF 812
           +DDFG+G++S   L+ LPV  +KID  FV  L  +  D AIV+ +  + + MG++  AE 
Sbjct: 536 IDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVVIALAKSMGMQVHAEG 595

Query: 813 VENQEIIDRLQTIGINYAQGYAIGRPQP 840
           +E +E    L     +  QGY  GRP P
Sbjct: 596 IEQREQARFLLDQQCDLGQGYWFGRPVP 623