Pairwise Alignments

Query, 856 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 841 a.a., diguanylate cyclase with phosphodiesterase domain from Pseudomonas putida KT2440

 Score =  336 bits (861), Expect = 4e-96
 Identities = 210/576 (36%), Positives = 326/576 (56%), Gaps = 36/576 (6%)

Query: 288 VLANRVNSLLARIYQQKERGKITLESIAEAVILTDIEAKVIYMNPKAETLLEVASSNAVG 347
           +LA R  +  + + ++KER +ITL++I +AVI TD+E  + YMNP AE L    S  A G
Sbjct: 252 LLAQR-QAFASALQEEKERAQITLQAIGDAVITTDVEGNIGYMNPAAEQLTHWQSGQAQG 310

Query: 348 ESLASLLKAGEQLNQAVFHCIRLGETMPQVA---KIKLLTTMPRIIERS---------IS 395
             L++L    ++      H    G ++ +      +K  +   R+I+R          + 
Sbjct: 311 LPLSALFSLVDE------HAEEDGRSLVEQVLSGSLKGGSEHARLIQRLDGSTVSINLVG 364

Query: 396 NVLNHEKEIVGTVVVLRDITQEELLKHQLQKRANFDGITGLLNRQAFE----EQLPEFAS 451
           + + ++ ++ G V+VL D+TQE      L  +A  D +TGL NR+ FE    + L + A 
Sbjct: 365 SPILNDGQVSGIVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALNDLAR 424

Query: 452 QARSLAVCYLDLEQFKLINDSCGHTAGDRMLAMVARAIQSCLGPQELLARIGGDEFGLVI 511
           QA   ++ +LDL+QFKL+ND+CGH AGD +L  +   +QS L   + LAR+GGDEFG+++
Sbjct: 425 QAGRHSLMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSGLREGDTLARLGGDEFGVLL 484

Query: 512 CD---RTALAVAQLLKQIIAQVSLQVLHD--KNCNYKVGLSIGVAFGRAPYINAQELLKD 566
            +     A  + + L+Q++     Q LH   K   +   +SIG+          +  L+ 
Sbjct: 485 ENCPPDQAERIGEQLRQMV-----QSLHFVWKGRPFVTTVSIGLVHMAQAPGTLEASLRA 539

Query: 567 ADIACIAAKAKGTNQIHIYDDKDKELTYQRNAPKWAVRIAQAIEENELLLYYQPIRGLGA 626
           AD+AC  AK KG N++ +Y   D EL+ +     W  R+  A+EEN   LY Q I  L  
Sbjct: 540 ADMACYMAKEKGRNRVQVYHADDSELSMRFGEMAWIQRLHVALEENRFCLYAQEIAPLKT 599

Query: 627 SSKRQRMEVLLRIQEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAFLWLSLNSQLWQD 686
                 +E+LLR+ +  GR + P+ FI AAER+ LM  +D+ V+R  F+ +    +  ++
Sbjct: 600 FEGPGHIEILLRLHDESGRTILPSSFIPAAERYGLMTALDRWVVRNVFMVIRKCLEEGRE 659

Query: 687 HCIS---INLSGNSLGAEGMVEYIAKQQQIFDIPSQCVCFEITETTAIQNRHRGMEMLRQ 743
             +S   INLSG+S+G +  +EY+ +    + IP + +CFEITET+AI N    +  + +
Sbjct: 660 GPLSTCAINLSGSSIGDDKFLEYLQRLFVEYAIPPRMICFEITETSAIANLGSAIRFINE 719

Query: 744 LRKLGFSFALDDFGSGFASYGYLRELPVDYVKIDGCFVKNLAVNAKDYAIVKSIQDVCRV 803
           L+ LG  F+LDDF +G +S+ YL+ LPVDY+KIDG FVK++  +  + A+V+ I  +  V
Sbjct: 720 LKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLKIDGSFVKDMLDDPVNRAMVEVINHIGHV 779

Query: 804 MGIETVAEFVENQEIIDRLQTIGINYAQGYAIGRPQ 839
           MG  T+AEFVE   I   LQ IG++YAQGY I RPQ
Sbjct: 780 MGKRTIAEFVETPLIEQALQEIGVDYAQGYLIERPQ 815