Pairwise Alignments

Query, 161 a.a., regulator of sigma D (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 158 a.a., stationary phase protein, binds sigma 70 RNA polymerase subunit from Escherichia coli BL21

 Score = 94.7 bits (234), Expect = 6e-25
 Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 4/148 (2%)

Query: 1   MLRELEKAEQKWGGSNKLIDQWLENRRKLLVHYCQIAGLPPYTNAEKSLPSFEHVKSFCD 60
           ML +L+   ++  GSNKL+D+WL  R+ LLV Y  + G+ P   +   L + + +  FC 
Sbjct: 1   MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRL-NEKALDDFCQ 59

Query: 61  LLVDYVSEGHFEVYDQVINACEKFGAPCKAAIQQVLPKITPTTNAALDFNDKYAETQDDQ 120
            LVDY+S GHF +Y+++++  E  G   +AA  ++ P++   T   +D+ D   ET  D 
Sbjct: 60  SLVDYLSAGHFSIYERILHKLEGNGQLARAA--KIWPQLEANTQQIMDYYDSSLETAIDH 117

Query: 121 VLY-QLDKDLSELAHTMETRFELEDKLL 147
             Y +  + LS++   +E RF LEDKL+
Sbjct: 118 DNYLEFQQVLSDIGEALEARFVLEDKLI 145