Pairwise Alignments

Query, 439 a.a., type I restriction-modification system, S subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 449 a.a., restriction endonuclease subunit S from Dickeya dianthicola ME23

 Score =  132 bits (333), Expect = 2e-35
 Identities = 110/440 (25%), Positives = 187/440 (42%), Gaps = 28/440 (6%)

Query: 6   LSPFGKIPNDWEYQIIIDNVEFLTGPAFDSSLFNTESRGARLVRGINLTQGSTRWGEDKT 65
           L+  G IP DWE     D V  ++G     S          L+   ++  G+ R      
Sbjct: 20  LTEVGVIPQDWEVVPFFDVVSIVSGQV---SPICEPYSSMILIAPDHIETGTGRL----- 71

Query: 66  KYWDVELNNLKKYQLAINDILIGMDGSLVGKNYAYLKQ---SDLPALLVQRVARLRAKSN 122
               +   + K+        +     ++  K   YL++   +D   L    +  LR K  
Sbjct: 72  ----ISTQSAKEQNAISGKYIFHSGDTIYSKIRPYLRKAIYADFDGLCSADMYPLRPKEG 127

Query: 123 LHSKYLYYMYATDFWLDYVEVVKTNSGIPHISNGDIKNFRFPFPPLPEQQ-KIAAILTSV 181
           +  KY+  +   + +  Y E V   SGIP I+  +I +F F  P   E+Q  IA +L   
Sbjct: 128 IEPKYILPLVLGNRFSKYAESVSVRSGIPKINRTEIADFLFVIPSQREEQTAIANVLFDT 187

Query: 182 DEVIEKTQAQIDKLKDLKSGMMQELLTKGVGIKQ----GDKYVPHIEFKDSPVGKIPKSW 237
           + +I   +  I K + +K+  MQ+LLT  + + Q     D       +K S  G IP+ W
Sbjct: 188 EALITALEQLIAKKQAIKTATMQQLLTGKIRLPQFALRDDGAAK--GYKKSEAGNIPEDW 245

Query: 238 EVKPLNSVVLKIIDCEHKTAPYV----DKSEYLVVRTSNVRHGEL-VLDDMKYTHADGYA 292
               +  +V  IID   +T   +         + +   NV+ G +  L +  +   + Y 
Sbjct: 246 YTSTILDIVTHIIDYRGRTPKKLGMDWGNGNIVALSAGNVKKGYIDFLSECYFGSDELYN 305

Query: 293 EWTNRAIPSLGDVLFTREAPAGESCLVPENTKVCMGQRMVLLRPDANVIFSNFFSLFLTS 352
            W     P   D++FT EAP G + L+P++ K  + QR +LL+ +       F    L S
Sbjct: 306 RWMTSGTPKRNDIVFTMEAPLGNAALIPDDKKYILSQRTILLQINEERFTPIFILQVLLS 365

Query: 353 EAASCAIYERSIGTTVSRINIEDIKRIPCIVPPLSEQQ-EISKAIQSVQNSILNKQEKLQ 411
           +     IY+ + G+T   I     +++    P   E+Q  I+  +  +   I   Q++L 
Sbjct: 366 DFFQSYIYDCATGSTAQGIKRSIFEKLYIAAPKNREEQTAIASILSDMDKDIQTLQQRLD 425

Query: 412 SLKNLKKALMQDLLTGKVRV 431
             + LK+ +MQ+LLTGK R+
Sbjct: 426 KTRQLKQGMMQELLTGKTRL 445



 Score = 44.7 bits (104), Expect = 6e-09
 Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 17/213 (7%)

Query: 225 FKDSPVGKIPKSWEVKPLNSVVLKIID-----CEHKTAPYVDKSEYLVVRTSNVRHGELV 279
           FK + VG IP+ WEV P   VV  +       CE    PY   S  +++   ++  G   
Sbjct: 18  FKLTEVGVIPQDWEVVPFFDVVSIVSGQVSPICE----PY---SSMILIAPDHIETGTGR 70

Query: 280 LDDMKYTHADGYAEWTNRAIPSLGDVLFTREAPAGESCLVPENTKVCMGQRMVLLRPDAN 339
           L  +    A      + + I   GD ++++  P     +  +   +C    M  LRP   
Sbjct: 71  L--ISTQSAKEQNAISGKYIFHSGDTIYSKIRPYLRKAIYADFDGLCSAD-MYPLRPKEG 127

Query: 340 VIFSNFFSLFLTSEAASCAIYERSIGTTVSRINIEDIKRIPCIVPPLSEQQEISKAIQSV 399
           +       L L +  +  A    S+ + + +IN  +I     ++P   E+Q     +   
Sbjct: 128 IEPKYILPLVLGNRFSKYA-ESVSVRSGIPKINRTEIADFLFVIPSQREEQTAIANVLFD 186

Query: 400 QNSILNKQEKLQSLKN-LKKALMQDLLTGKVRV 431
             +++   E+L + K  +K A MQ LLTGK+R+
Sbjct: 187 TEALITALEQLIAKKQAIKTATMQQLLTGKIRL 219