Pairwise Alignments

Query, 1033 a.a., type I restriction-modification system, R subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 818 a.a., Type I site-specific restriction-modification system, R (restriction) subunit and related helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 53.1 bits (126), Expect = 8e-11
 Identities = 83/408 (20%), Positives = 163/408 (39%), Gaps = 48/408 (11%)

Query: 309 RYQQYRAVNKVIERLKTGQDRKEKSGVVWHTQGSGKSLTMVMLAVKMRRDPVLKQYKLVF 368
           RY Q  AVN+ +E +  GQ R     ++    G+GK+ T   +  ++ +    K  +++F
Sbjct: 169 RYYQQIAVNRTVEAVANGQGRI----LLVMATGTGKTYTAFQIIHRLWKSRAKK--RILF 222

Query: 369 ITDRTQLDEQLSSTFRAAQGETIYNAGSVAELKALLKKDSSDLVTAMVQKFLDLEKE--- 425
           + DRT L +Q     R    +   +  ++ + K + + D  + + +  ++ +D E +   
Sbjct: 223 LADRTALIDQT----RRGDFKHFKDKMTIIKKKVVSRADGKEELVSNNKRGIDTEDKAYE 278

Query: 426 ---------LSTNNENEGFINLNPSDKIIVLADEAHR--TQFGGLAMTINAALPNAPKIG 474
                     + ++  + + + +P    +++ DE HR   +       I      A  IG
Sbjct: 279 VFLGLYQGLTNASDIEDAYKDFSPEFFDLIVIDECHRGSAKEDSAWREILRYFNKATHIG 338

Query: 475 FTGTPL-LKTQKMDKAFGGYIDEYKINQAVDDG--ATVRILYEGRQVKTEVAGESLDKLF 531
            T TP   K     + FG  I  Y + Q +DDG  A  R++     V  E       K  
Sbjct: 339 LTATPKETKEVSNIEYFGDPIYTYSLKQGIDDGFLAPYRVVRVNLNVDAEGWRPEQGKK- 397

Query: 532 EAYFGSYSKEEQREIKQKYGVERAVREAPARIRWVCMDLLEHYRKHIQPDGF-KAMIVVG 590
                   KE +  +  +   ++ +     R + V   L E  + +   D F K ++   
Sbjct: 398 ----DKDGKEVEDRVYNRKDFDKTL-VIDERTQTVARKLTEFLKGY---DRFAKTIVFCS 449

Query: 591 SRHAATIFKKTLDELGAPPSEVIISGYHNDEAYIAVHTDKTKQKKIIQDFTKPLSENPVA 650
               A   +  L  L A   +++     N +  + +  D  + K+ + +F  P    PV 
Sbjct: 450 DIDHAERMRFALSNLNA---DLVAK---NHKYIMQITGDNDEGKRELDNFINPEETYPV- 502

Query: 651 FLIVKDMLLTGFDAPIAQVMYIDRKLQDHTLMQAI----ARVNRTYAK 694
                +++ TG DA   +V+ +D +++  T  + I     R+N  + K
Sbjct: 503 IATTSELMTTGVDAQTCRVIVLDAEIKSMTKFKQIVGRGTRINEEFGK 550