Pairwise Alignments

Query, 295 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 305 a.a., LysR family transcriptional regulator from Dickeya dadantii 3937

 Score =  203 bits (516), Expect = 4e-57
 Identities = 111/296 (37%), Positives = 168/296 (56%), Gaps = 9/296 (3%)

Query: 4   FSALPIFVTVVECGSFSLAGQKLGLSKSAISKRISQLEQHLGIQLLQRTTRSLSLTDAG- 62
           F  L +F  V E GSF+ A + +G+S   +S+ +++LE+ LG +L  RT+R L+LT+ G 
Sbjct: 7   FEGLAMFAKVAEEGSFAAAARVMGVSVPTVSRAVARLEERLGGRLFNRTSRQLALTEFGQ 66

Query: 63  ---ARYFEYIRPAVQLTQEGLDAISELQQTPRGNLRISVPMVFGRLYIAPLIAEFLKRYP 119
              A+  E  R A ++  E      EL   PRG +R++VPM FG  ++ PL+ E ++++P
Sbjct: 67  SMAAKASEMYRQAEEVESEA----HELSVQPRGQVRLAVPMSFGLRWVVPLLPELIRQFP 122

Query: 120 DIQLQMQMDDKITDLIAGGFDLAIRIGELPDSSLIARKIAPCLSVICASPAYLTQHGLPM 179
           ++ + + + D   DLIA GFD A+RI  LPDSSL+AR++      + A+PAYL +H  P 
Sbjct: 123 ELSVDLHLSDASVDLIAEGFDAALRIAALPDSSLVARRLCAVTQYLVAAPAYLAEHSAPQ 182

Query: 180 TPCELTQHNCLFYSYFQDGVEWSF-HSPDGMQRVQPKGNYQVNNSDAINQACLDGLGIAN 238
            P EL+   C  Y+Y      W F H     + + P G  +V NSDA+  + L G GIA 
Sbjct: 183 HPRELSGRQCFSYAYRARSQVWRFTHHSGAQEDIVPNGPLRVTNSDALLPSLLAGQGIAE 242

Query: 239 LPRFIVEPDLQTGHLQALLTDYPLPEHGIYAVYPQRKYQPTKVTVLIEFLMAKLGQ 294
           LP FI    L+ G L  LL ++ + + G+Y V P  + +P KV VL +F    L +
Sbjct: 243 LPEFIAAEYLKAGSLVHLLDEWSMTQGGLYFVTPTSRSRPLKVKVLSDFFAKYLSE 298