Pairwise Alignments

Query, 92 a.a., DNA-directed RNA polymerase, omega subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 129 a.a., DNA-directed RNA polymerase omega subunit from Agrobacterium fabrum C58

 Score = 62.0 bits (149), Expect = 2e-15
 Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 7/95 (7%)

Query: 1  MARVTVEDAVEQIGNRFDMILVAARRARQIAVQGKDPMVEEMNDKPTVIALREIELGLVN 60
          MARVTVED ++++ NRF+++L+A+ RARQI+ QG    V+  NDK  V+ALREI    ++
Sbjct: 1  MARVTVEDCIDKVDNRFELVLLASHRARQIS-QGSSITVDRDNDKNPVVALREIADETLS 59

Query: 61 AHTLDAD------ERQTVREREAAEIAAVAAIAEG 89
             L  D      +   V E E   +   A+ A+G
Sbjct: 60 PDDLKEDLIHSLQKHVEVDEPEPDPVTLAASAADG 94