Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1510 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  444 bits (1143), Expect = e-128
 Identities = 238/585 (40%), Positives = 358/585 (61%), Gaps = 5/585 (0%)

Query: 915  PGKWVWILE-RGKVVETNAQERPIRMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVA 973
            P   VW+   R  + ++N   R +    T  ++T +   E +L L+++V +   EA+ + 
Sbjct: 910  PTSKVWLDSVRFPIFDSNGVVRAVCSQST--DVTMKHHAEEQLRLAAKVFDRAGEAITIT 967

Query: 974  GLDYRIRSVNPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIW 1033
                 I +VN +F  ITGYS  ++  K    L   +  +D ++++ + L+    W GEI+
Sbjct: 968  DSSGNIITVNDSFCRITGYSHQEVIGKNPRFLQSGKHGKDFYDAMWRSLIEQGCWQGEIF 1027

Query: 1034 IRNKARRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNR 1093
             R K       WL +N V D  G   ++VA+F+DI+  K ++  + FLA+ D LTG+PNR
Sbjct: 1028 NRRKNGEIYPEWLTVNSVRDENGSVVNYVAIFSDISAIKSSQRRIEFLATHDELTGIPNR 1087

Query: 1094 TLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVRE 1153
            +L  DRL HA++QA R    +A+LF+DLD FK INDS+GH +GD LLK    RL+  VR+
Sbjct: 1088 SLLMDRLKHAVAQAKRQKTKLAVLFIDLDNFKVINDSLGHDVGDQLLKQATERLKHCVRD 1147

Query: 1154 GDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPN 1213
             DT+ARLGGDEF  +L  V+  K  + ++ +++    A F ++DKSL +S SIGIS++P+
Sbjct: 1148 SDTLARLGGDEFVAVLTDVSLEKVNS-VAARIVDFLGASFSINDKSLFVSASIGISVFPD 1206

Query: 1214 DAKDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLV 1273
            D +D  +L+K ADTAMY AK  GRN +QF+ +++  +A + + LETGL+ A+      + 
Sbjct: 1207 DGQDSLTLLKHADTAMYRAKERGRNQYQFFADEMKVIALQRLTLETGLRLALETKSFRMC 1266

Query: 1274 YQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLA 1333
            YQP+  +  G + G EALLRW+   LG +SPA FIP+AE  G+I  IG  V     +Q+A
Sbjct: 1267 YQPQVDIHTGEVVGAEALLRWRDPTLGEVSPAHFIPIAESCGLIGAIGETVFTMVLEQIA 1326

Query: 1334 EWNELGFSDISMAVNLSARQLK-ADIISTIEVALAVSGLPAKALELELTESMIMGNPQES 1392
             W E G +   +A+N+SA QL+ A   + +   L  SG+ ++ + +ELTES +M      
Sbjct: 1327 YWREKGLTVPRIAINVSAHQLRDAGFAAKVGSWLDSSGISSELIGIELTESALMERIDMV 1386

Query: 1393 VNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAI 1452
              +L+    +G+ +++DDFGTGYSSLSYLK+ PI  LKIDR FV  I  + DD +I  AI
Sbjct: 1387 KEMLTSFDGMGMKVSIDDFGTGYSSLSYLKKLPIHELKIDRSFVDGIALERDDRSIAKAI 1446

Query: 1453 IALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQ 1497
            I ++ +L + VVAEGVE++EQL  L  +GCD VQG+L  +PLS +
Sbjct: 1447 IDMSRALGMRVVAEGVESEEQLGVLKEEGCDMVQGYLFHRPLSPE 1491