Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 703 a.a., GGDEF domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  452 bits (1162), Expect = e-131
 Identities = 257/628 (40%), Positives = 372/628 (59%), Gaps = 18/628 (2%)

Query: 884  PEDRERFKYELTEHLQGRSPFFEVEYRIEHSPGKWVWILERGKVVETNAQERPIRMTGTT 943
            P DRERF+    E L   S     E R+    G+ +WI E  + V  + ++R +   GT 
Sbjct: 77   PADRERFR----EILARDSVVRNFEARVRTRSGEIIWIAENARAVY-DGRDRLVCYEGTV 131

Query: 944  RNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSE----GQISD 999
            +NIT+RK  E  L L++ V  ++ EA+VV   + RI +VN AF  +TG++     GQ  D
Sbjct: 132  QNITARKQAEESLRLAATVFETVGEAIVVTDRERRILAVNAAFERMTGWNAAEMVGQTCD 191

Query: 1000 KFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARR---AILVWLEINQVIDVKG 1056
               + +   R+  +++            W+GE W R K      A L    ++Q  D KG
Sbjct: 192  LLAVEMIGLREIEEMWRLAANT----GQWSGETWTRRKESEPFPAALALTAVDQGADAKG 247

Query: 1057 ETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVAL 1116
            E   FV +  DIT +++ E+ +RF AS D LT LPNR    + L  AI +A ++   +A+
Sbjct: 248  EDGRFVLLLRDITRKRRDEQRIRFHASHDALTRLPNRHTVMEALGEAIVRAEQTGERLAV 307

Query: 1117 LFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTK 1176
            L+LD++RFK INDS GH +GD LL+ VA RL++ VR  D + RLGGDEF ++L  V    
Sbjct: 308  LYLDVNRFKDINDSYGHAVGDELLRQVARRLKACVRASDVIGRLGGDEFVMLLPSVGDHT 367

Query: 1177 AATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALG 1236
            AA   + KVL AF  PF ++   L   TSIGI+LYP+DA   +SL+  AD AMYHAK  G
Sbjct: 368  AAQACANKVLYAFAEPFDMEGLQLFAGTSIGIALYPDDADGAESLLSRADAAMYHAKR-G 426

Query: 1237 RNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQH 1296
               +  +  +++      + LE  L+ A+  ++  LVYQPK    +G++ G EAL+RW+H
Sbjct: 427  GLPYSCFDIEMDRQVAERVSLENDLRLALGEDQFRLVYQPKVDALSGAIIGAEALIRWRH 486

Query: 1297 SELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQL-K 1355
                 +SP  FIP+AE  G+I  I  WV+ ++C+Q+AEW   G    S++VNLS  Q   
Sbjct: 487  PVRADVSPGLFIPVAERAGLIGAIDDWVLVEACRQVAEWRAQGLILPSISVNLSPAQFHD 546

Query: 1356 ADIISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGY 1415
              +   ++ ALA SGLP   LELE+TE+M+  +   ++ IL +L  LG+ +++DDFGTGY
Sbjct: 547  GRLKEKVKAALAGSGLPPSVLELEITETMMASDVDRAIEILGQLTTLGVRVSLDDFGTGY 606

Query: 1416 SSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLN 1475
            SSL+YLK FP+ TLKIDR FV ++  +  D AI +++IALA +L  +V+AEGVET+EQ  
Sbjct: 607  SSLAYLKLFPVSTLKIDRAFVTELPGNAKDGAIIASVIALAGNLGFSVIAEGVETREQAA 666

Query: 1476 FLALQGCDQVQGFLLSKPLSAQDCQTLL 1503
            FLA +GC  +QGFL S+P++A     LL
Sbjct: 667  FLAARGCPIMQGFLFSRPVNAATFAGLL 694