Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 830 a.a., two-component system response regulator from Magnetospirillum magneticum AMB-1

 Score =  494 bits (1272), Expect = e-143
 Identities = 257/626 (41%), Positives = 386/626 (61%), Gaps = 1/626 (0%)

Query: 880  DNAHPEDRERFKYELTEHLQGRSPFFEVEYRIEHSPGKWVWILERGKVVETNAQERPIRM 939
            D  +PED         + + GR+  +E+  R     G  +W       +   +       
Sbjct: 191  DITYPEDMNAHTQMRDDMMAGRTDSYELTKRYIRRDGNILWARLTVTAMREGSDNELRFT 250

Query: 940  TGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISD 999
                 ++T +K +E+ + L++ V  S  E + V     +I  VNPAF+ +TGY   ++  
Sbjct: 251  VAVVEDVTEKKRLEDHMRLAATVFESTGEGLFVTDEKRQIIHVNPAFTELTGYPADEVIG 310

Query: 1000 KFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARRAILVWLEINQVIDVKGETS 1059
            +    LA  R   + ++++ + L     W GEIW R K       WL I+ V + +GE +
Sbjct: 311  RTPKFLASGRHTPEFYDAVFKTLAECGKWQGEIWNRRKTGEMFAEWLNISVVRNERGELT 370

Query: 1060 HFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFL 1119
            ++VAVF+DIT RK+ EE L + A+ D LT LPNRTLFQ+RL  A+++AHR+  IVALLF+
Sbjct: 371  NYVAVFSDITSRKQDEERLNYQANHDPLTRLPNRTLFQERLTRALTRAHRNQAIVALLFI 430

Query: 1120 DLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAAT 1179
            DLD FK +ND++GH  GD+LL+ VA RL S VR+GDTVARL GDEFT+ILE +++ +   
Sbjct: 431  DLDFFKQVNDTLGHLAGDILLQQVAERLTSCVRQGDTVARLAGDEFTVILEEISEPRDGA 490

Query: 1180 LISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNN 1239
            +++ K+L     PF L      IS+SIG++LYP+D  D  +LIK AD AMY AK  GRN 
Sbjct: 491  VVAHKILSLLAEPFDLQGHEARISSSIGVALYPSDGGDAQTLIKLADAAMYRAKHQGRNA 550

Query: 1240 FQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSEL 1299
             +F++  +N  A   + LE+ L+ A+   E  L YQP F  R+GS+  +EALLRW+H + 
Sbjct: 551  CRFHSESINAQAFERLALESALRHAVERREFLLHYQPIFDARSGSVVAVEALLRWRHPDF 610

Query: 1300 GPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQLKA-DI 1358
            G I P +F+PLAEETG+I  +G +V++++C+Q   W + G + + + +NLS+RQL+A ++
Sbjct: 611  GMIMPNQFLPLAEETGLIMPVGKFVLDEACRQAKAWLDAGHTGLKVGINLSSRQLRAPEL 670

Query: 1359 ISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSL 1418
            I  I  AL  SGLP  ALEL++ ES I+   Q+   I ++ K LG+ +A+D FG+GYSS 
Sbjct: 671  IEDIAAALEGSGLPPSALELDVPESAIIDKGQDVDAIFTQFKTLGVRMAIDAFGSGYSSF 730

Query: 1419 SYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLA 1478
            ++L++ P +TLKID+ FVRD  +  +++ I +AI+A+A  L L+VVA G+ET+EQL  L 
Sbjct: 731  AFLRKLPSNTLKIDQGFVRDAASGAEESEIVTAIVAVARGLHLSVVAPGIETEEQLAHLV 790

Query: 1479 LQGCDQVQGFLLSKPLSAQDCQTLLQ 1504
               CD VQGFL + P+ A++    L+
Sbjct: 791  KYDCDMVQGFLFAHPMPAEELTEFLR 816



 Score = 38.1 bits (87), Expect = 4e-06
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 983  NPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARRAI 1042
            NPAF  + GYS+ ++       + Y  +  +    +   ++  +  + E+  R   R   
Sbjct: 170  NPAFCTMVGYSDAELQKMTYRDITYP-EDMNAHTQMRDDMMAGRTDSYELTKRYIRRDGN 228

Query: 1043 LVWLEINQVIDVKG---ETSHFVAVFTDITERKKAEEDLRFLASFDTLTG 1089
            ++W  +      +G   E    VAV  D+TE+K+ E+ +R  A+    TG
Sbjct: 229  ILWARLTVTAMREGSDNELRFTVAVVEDVTEKKRLEDHMRLAATVFESTG 278