Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 831 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  444 bits (1141), Expect = e-128
 Identities = 238/583 (40%), Positives = 347/583 (59%), Gaps = 8/583 (1%)

Query: 925  GKVVETNAQERPIRMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNP 984
            G VVE   +    R+   ++ +         L L   V ++  E +       RI +VNP
Sbjct: 7    GTVVEAKGKSPQRRVEELSQQV-------ERLSLYQAVFDNAFEGMFATDAANRIIAVNP 59

Query: 985  AFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARRAILV 1044
            AF+AITGY+  +        L+        +  +  QL     W GE+  R+K  R + +
Sbjct: 60   AFTAITGYAAEEAIGNDPRMLSSGFHDPAFYQEMWDQLSTTGQWQGEVVDRHKDGRPVRL 119

Query: 1045 WLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAI 1104
            WL I       G+ +  +AVF D+TE ++  E L   ++FD LT LPNR LF DRL  A+
Sbjct: 120  WLSITSQRGADGKVARRIAVFRDVTEARETAEQLWQRSNFDPLTELPNRNLFLDRLLQAL 179

Query: 1105 SQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDE 1164
              A R  + VA+LF+ LD FK+INDS+GH IGD +L+  A R Q+ +R+GDT AR GGDE
Sbjct: 180  VLAGREGSKVAMLFIGLDGFKNINDSLGHWIGDKVLQEAARRFQNCLRQGDTAARFGGDE 239

Query: 1165 FTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKF 1224
            FT++L GV  T     +   VL+  Q PF+++   + IS SIG+ ++P D +DVDSL++ 
Sbjct: 240  FTVVLSGVRATAEVEAVIRSVLEVLQEPFVVEHHHILISCSIGVCMWPGDGEDVDSLMRN 299

Query: 1225 ADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRNGS 1284
            A  A+  AK  GRN F+F+T  ++  A    +L   L  A+S  E  LV+QP   +++G 
Sbjct: 300  ATAALQQAKQAGRNTFRFFTPAMDARAQARSRLADELSGALSQGEFHLVFQPLVDVKSGK 359

Query: 1285 LTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDIS 1344
            +   EALLRW +  LG +SP +F+PLAEE G+I  IG W++  +C++   W  +G  +I+
Sbjct: 360  VNAAEALLRWHNRYLGVVSPDQFVPLAEEIGLIRPIGEWLLTAACREALVWQGMGLGEIN 419

Query: 1345 MAVNLSARQL-KADIISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALG 1403
            +AVN+S RQ  + DI+  I  AL  + LP   L +E+TE +++ N +E +  +  ++ LG
Sbjct: 420  IAVNISPRQFQQGDIVGIIRRALEDTRLPPWLLTIEITEGLLLSNGEEILAKMEAIRTLG 479

Query: 1404 LTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNV 1463
            ++++VDDFGTGYSSLSYLK FP+D LKIDR F+ D+ +  DDA +  AIIAL HSL L V
Sbjct: 480  VSLSVDDFGTGYSSLSYLKSFPVDVLKIDRSFIADMGDHSDDATMVEAIIALGHSLHLEV 539

Query: 1464 VAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQQR 1506
            VAEGVET++QL+F+  QGCD  QG+  S PLS    +  + +R
Sbjct: 540  VAEGVETKQQLDFITAQGCDVAQGYYFSPPLSGPRFREFVLER 582