Pairwise Alignments
Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1
Subject, 1491 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 547 bits (1409), Expect = e-159
Identities = 437/1525 (28%), Positives = 697/1525 (45%), Gaps = 201/1525 (13%)
Query: 118 WVGSFSQGINRLDLKTGTFKRFGVEQGLTDPRVTKLNIVGNT-LWIGTQSGLFSFS-TRT 175
W G+F Q + F GL + L + + +W T+ GL+ S ++
Sbjct: 24 WAGNFVQRV------------FTDRDGLEATSIRALTLDDHGFIWAATEQGLYRVSNSKV 71
Query: 176 NRLTKVSLGTSI-EPYITSLANVDNTYLLAGTKGSG-TFAVSANTITRLNIPQ------- 226
R+ K + + +IT++ N+D LL T + + ++ N ++ P
Sbjct: 72 RRIDKTGSELRLADEFITTVVNIDRDLLLLSTNAATYLYNIAKNQFIQMGSPNLFPHFSG 131
Query: 227 DAIAYQVKANSSRAITLALGNQLWHYDLATQQGKALWQ--ADKNIPYIKDFIQTPEGQFW 284
+ V+ N+ L Q++ AT + Q ++++P+ K + P+GQ
Sbjct: 132 GVLISAVRKNAQEWRLLIDNGQIYDLSTATLTLTLVTQLPVNRDLPWRK-LLSMPDGQIL 190
Query: 285 VVGPEAGLIQLEREADKFVATYHQYDMKRTNSISENNILSLLEDPFGNLWLGASYSGLNK 344
V G + L+ L +K V D + T S+ NIL +LED +W+ S G+ +
Sbjct: 191 VAG-QFQLLLLNHLGEKLV------DYQWTESMG--NILDMLEDSKQRIWIATS-RGVYR 240
Query: 345 INTRRQYFQHLFEYTNELPLQSNNVRTIYRSQDQALWIGTEGAGLKRLAVNSTTFEHYTS 404
+ + ELP S + + +W + AGL + + ++ E+Y
Sbjct: 241 FEPQTLQISPV----PELPDWST---AMVEDRHGEIWFSSR-AGLLKWSPDTHQLENYQQ 292
Query: 405 FFAKALGQQTQHLNLILRSIVQDKQGILWFA-SNYGLGRLTPNGEFNLLNVADSRDTSAE 463
+T L++I+ DK G++W S GL L +F L
Sbjct: 293 ELKAQANMET------LKAILFDKSGLMWVGGSGDGLALLASQPDFILDTFTSEPPHELS 346
Query: 464 ANYIRSLELDNQNRLWVATSHALYRKSSVNDEFTPVPLTGI---ENFHPIQNLL------ 514
+ S+ ++ LW SH + + T + + G+ E+ + I + +
Sbjct: 347 DAMVWSVFASDEG-LWFGASHLSFIARNSQKAVT-IDIDGLKPHESIYGISDFIDHYLLV 404
Query: 515 -----------LTLKSD--------------------------KNILWIGSLNGLVKLDM 537
LTLK K WI S GL +
Sbjct: 405 STTSGLFVVDKLTLKGSSFAQWAHGSEAFKNKVIYGTYADPKLKGRFWIASATGLYFWEQ 464
Query: 538 QTGHGEVFYHDP---HDKNSIINNRIRDIFVASNGDTWFATHGGISRLPAQALSPIFSDY 594
+ F D D + IR ++ AS+G W + + Q L F D
Sbjct: 465 GLFEPQPFNIDGPTGDDSPELKRPTIRTLYRASDGKLWISGRKVFGYIDEQNL---FHDQ 521
Query: 595 TRE-QGLPSDTIYALLED-DDNHIWFSS-NAGIGKLNPHNGKIIN--------------- 636
+ GL S+ + LE+ +WF S G+ + + +GK+++
Sbjct: 522 RQLFSGLNSEPSISHLEEISPGVMWFGSYERGLFEYHLQDGKLVSLTLQWQVNCSSVFFI 581
Query: 637 ---------------------------FNEQEGLQALEFNGGVKLKDSDGDLWFGGINGI 669
F + +GL + E N G L+ G G+
Sbjct: 582 QKTTNANIVACADSLIRQDRASGQIAMFTQLDGLISNEMNEGAYFYSPGAGLYIGTPEGV 641
Query: 670 NRFNPKTLPNQRSEARVALTAYKIAGQKQTILDLSHPPQIVMNYADQLISFEVTSLDFSY 729
+ L N+ ++ V L + + T + L P +V+ ++S ++T+LD+
Sbjct: 642 MHLDADKLTNRIADDHVMLESVSVYYDNNTQVSLLPQPMMVIKPGANMVSLQITNLDYLD 701
Query: 730 PGKNRFSYFL--EGFDNQWHDLPTGNEITFTNIDPGNYLLHVRHSLEYNSKGNYALLVNL 787
+F Y L +G ++ + L ++I + G Y+L V
Sbjct: 702 DSPIQFKYRLRYQGDEDNYVLLQGESQINLAGLAAGEYVLEVLSQ--------------- 746
Query: 788 TVKAPFYRTPFAYAFYV----------------LFTLVSMGWALRWRKQKRSQQ-QEFET 830
V + PF + FYV +F+++++G L W +Q++ +
Sbjct: 747 -VNGIWSDKPFTFPFYVEQHWWLSQGFKGILLLVFSIIALG--LAWYRQRQVRTFMAMNQ 803
Query: 831 SIRASEERLKLALWASGDGMWDWNIQEQQVYRTNTDIAVPQWNGHQLLHDNA---HPEDR 887
++ S++RL+ +L S +W+W+ Q Y N + +L HP DR
Sbjct: 804 ALTESDDRLRQSLRGSDSDLWEWHRDTQCFYLDNRGYVLGNHANEIVLTLETLPVHPLDR 863
Query: 888 ERFKYELTEHLQGRSPFFEVEYRIEHSPGKWVWILERGKVVETNAQERPI-RMTGTTRNI 946
E+ + L G FE EYR G W W+ RG+ V N Q + I R+ G +I
Sbjct: 864 EKVLIQWNRMLSGDLDRFEAEYRYHRRDGNWGWLRVRGRPVARNKQTQEIERVAGIYSDI 923
Query: 947 TSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISDKFLIHLA 1006
T R+ +E+E+ L +Q + +E V++ +D IR N A I G + K L+ L+
Sbjct: 924 TLRRQLEDEVSLLAQAFENTSEGVLILDVDENIRVANHAAQHIIGSEQ-----KSLVGLS 978
Query: 1007 YSR--QQRD-LFNSIEQQLLRHKHWAGEIWIRNKARRAILVWLEINQVIDVKGETSHFVA 1063
+S+ Q +D L + Q L + W GE + + VWL ++ + V H+V
Sbjct: 979 FSQFVQMKDGLSTEVAQLLGQETSWTGERELVGQNGLVCPVWLNVSVMQSVNQNAIHYVV 1038
Query: 1064 VFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDR 1123
VF+DITERK+ E DLR LA++D LTGLPNR+LF +RL +I A ++ +ALLFLDLDR
Sbjct: 1039 VFSDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLMQSIQAAEQNGEKLALLFLDLDR 1098
Query: 1124 FKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISE 1183
FKH+NDS GH +GD LL ++RLQS + + R GGDEF I+L+ V + ++E
Sbjct: 1099 FKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLKNVKELSDINHLAE 1158
Query: 1184 KVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFY 1243
++L APF L + ISTSIGIS++P+DA ++ IK AD AMYHAK GR NF++Y
Sbjct: 1159 QLLAQIVAPFRLFGREFYISTSIGISIWPDDAMQPEAFIKNADLAMYHAKEEGRGNFKYY 1218
Query: 1244 TNKLNEMATRHMQLETGLKQAISHNELSLVYQPKF-CLRNGSLTGLEALLRWQHSELGPI 1302
+++ N A H++LE L++AI E L YQP+ LR G+EAL+RWQH G +
Sbjct: 1219 SSERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRGDKFIGMEALIRWQHPVDGFV 1278
Query: 1303 SPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQLK-ADIIST 1361
P FI +AE G++ I WV+ +C A W + M+VN+SA + D I
Sbjct: 1279 RPDIFIKVAEACGLVVDIDRWVLRCACLDGARWAKQTIEPFKMSVNISAVHFRQPDFIDG 1338
Query: 1362 IEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYL 1421
++ L + +PA +L LE+TE ++M Q + L +L LG+ +A+DDFGTGYSSL+YL
Sbjct: 1339 VKKILDATHMPASSLCLEITEGVLMKELQVAKTHLKQLDDLGIEVAIDDFGTGYSSLAYL 1398
Query: 1422 KRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQG 1481
+ F +DTLKIDR F+ DI ++ D AI S+II LA +L+L V+AEGVET EQL L +G
Sbjct: 1399 RNFEVDTLKIDRSFLIDIASNGADQAIVSSIIELARNLKLTVIAEGVETVEQLEQLFSRG 1458
Query: 1482 CDQVQGFLLSKPLSAQDCQTLLQQR 1506
C VQG+ +KP+S D + LQ +
Sbjct: 1459 CYIVQGYYFAKPMSVSDFEKYLQSQ 1483
Score = 54.3 bits (129), Expect = 1e-10
Identities = 129/632 (20%), Positives = 223/632 (35%), Gaps = 141/632 (22%)
Query: 54 DGLNQNTITSLFMDSAGMLWIGTQDGLHSYNGYNFNLFIHSPNDPKSISESYVSDIIQDA 113
DGL +I +L +D G +W T+ GL+ +
Sbjct: 37 DGLEATSIRALTLDDHGFIWAATEQGLYRVS----------------------------- 67
Query: 114 EGYLWVGSFSQGINRLDLKTGTFKRFGVEQGLTDPRVTK-LNIVGNTLWIGTQSGLFSFS 172
+ + R+D KTG+ E L D +T +NI + L + T + + ++
Sbjct: 68 ---------NSKVRRID-KTGS------ELRLADEFITTVVNIDRDLLLLSTNAATYLYN 111
Query: 173 TRTNRLTKVSLGTSIEPYITSLANVDNTYLLAGTKGSGTFAVSANTITRLNIPQDAIAY- 231
N+ ++ ++ P+ SG +SA R N + +
Sbjct: 112 IAKNQFIQMG-SPNLFPHF-----------------SGGVLISA---VRKNAQEWRLLID 150
Query: 232 --QVKANSSRAITLALGNQLWHYDLATQQGKALWQADKNIPYIKDFIQTPEGQFWVVGPE 289
Q+ S+ +TL L QL ++++P+ K + P+GQ V G +
Sbjct: 151 NGQIYDLSTATLTLTLVTQL--------------PVNRDLPWRK-LLSMPDGQILVAG-Q 194
Query: 290 AGLIQLEREADKFVATYHQYDMKRTNSISENNILSLLEDPFGNLWLGASYSGLNKINTRR 349
L+ L +K V D + T S+ NIL +LED +W+ S G+ + +
Sbjct: 195 FQLLLLNHLGEKLV------DYQWTESM--GNILDMLEDSKQRIWIATS-RGVYRFEPQT 245
Query: 350 QYFQHLFEYTNELPLQSNNVRTIYRSQDQALWIGTEGAGLKRLAVNSTTFEHYTSFFAKA 409
+ ELP S + + +W + AGL + + ++ E+Y
Sbjct: 246 LQISPV----PELPDWST---AMVEDRHGEIWFSSR-AGLLKWSPDTHQLENYQQELKAQ 297
Query: 410 LGQQTQHLNLILRSIVQDKQGILWF-ASNYGLGRLTPNGEFNLLNVADSRDTSAEANYIR 468
+T L++I+ DK G++W S GL L +F +L+ S ++ +
Sbjct: 298 ANMET------LKAILFDKSGLMWVGGSGDGLALLASQPDF-ILDTFTSEPPHELSDAMV 350
Query: 469 SLELDNQNRLWVATSHALYRKSSVNDEFTPVPLTGIENFHPIQNLLLTLKSDKNILWIGS 528
+ LW SH + + T I+ P +++ + L + +
Sbjct: 351 WSVFASDEGLWFGASHLSFIARNSQKAVT----IDIDGLKPHESIYGISDFIDHYLLVST 406
Query: 529 LNGLVKLDMQTGHGEVFYHDPHD----KNSIINNRIRD------IFVASNGDTWFATHGG 578
+GL +D T G F H KN +I D ++AS +F G
Sbjct: 407 TSGLFVVDKLTLKGSSFAQWAHGSEAFKNKVIYGTYADPKLKGRFWIASATGLYFWEQGL 466
Query: 579 ISRLPAQALSPIFSDYTREQGLPSDTIYALLEDDDNHIWFSSNAGIGKLNPHN------G 632
P P D L TI L D +W S G ++ N
Sbjct: 467 FEPQPFNIDGPTGDD---SPELKRPTIRTLYRASDGKLWISGRKVFGYIDEQNLFHDQRQ 523
Query: 633 KIINFNEQEGLQALEFNGGVKLKDSDGDLWFG 664
N + + LE + S G +WFG
Sbjct: 524 LFSGLNSEPSISHLE-------EISPGVMWFG 548
Score = 30.8 bits (68), Expect = 0.001
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 56 LNQNTITSLFMDSAGMLWIGTQDGLHSYNGY--NFNLFIHSPNDPKSI-----SESYVSD 108
L + TI +L+ S G LWI + GY NLF +D + + SE +S
Sbjct: 485 LKRPTIRTLYRASDGKLWISGRKVF----GYIDEQNLF----HDQRQLFSGLNSEPSISH 536
Query: 109 IIQDAEGYLWVGSFSQGINRLDLKTG 134
+ + + G +W GS+ +G+ L+ G
Sbjct: 537 LEEISPGVMWFGSYERGLFEYHLQDG 562