Pairwise Alignments
Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1
Subject, 1516 a.a., diguanylate cyclase (GGDEF) domain from Kangiella aquimarina DSM 16071
Score = 679 bits (1752), Expect = 0.0
Identities = 475/1548 (30%), Positives = 753/1548 (48%), Gaps = 144/1548 (9%)
Query: 41 ANTQLKFEHIRSEDGLNQNTITSLFMDSAGMLWIGTQDGLHSYNGYNFNLFIHSPNDPKS 100
AN QL + I ED L+Q+ IT++ D G LWIGT+DGL+ Y+GY +F +
Sbjct: 23 ANQQL-VDAIGIEDQLSQSVITAIVEDPQGFLWIGTEDGLNRYDGYQIKVF---QKQNSN 78
Query: 101 ISESYVSDIIQDAEGYLWVGSFSQGINRLDLKTGTFKRFGVEQGLTDPRVTKLNIVGNTL 160
+S + + D++ G +W+ + G+N +TG +N N L
Sbjct: 79 LSHTTIHDLMVADNGDIWIAT-ENGLNIFQQQTGKI----------------INFHHNPL 121
Query: 161 WIGTQSGLFSFSTRTNRLTKVSLGTSIEPYITSLANVDNTYLLAGTKGSGTFAVSANTIT 220
T + F + V L T P +Y +G T+ + +
Sbjct: 122 EPFTLANDFVTDLSKDEKGGVWLATYNGP----------SYYDPAIEGFKTYPIMLSRRV 171
Query: 221 RLNIPQDAIAYQVKANSSRAITLALGNQLWHYDLATQQGKAL-WQADKNIPYIKDFIQTP 279
+ + Y A+T +L ++ ++Q + + I D +TP
Sbjct: 172 TATVSELRKIYVDSKQRVWAVTTR--GELAQFNPTSEQFFIINSTTGGQLGAIADIEETP 229
Query: 280 EGQFWVVGPEAGLIQLEREADKFVATYHQYDMKRTNSISENNILSLLEDPFGNLWLGASY 339
+G W+V + G+I+ E +FV+ ++ R + + + I D NLW+G
Sbjct: 230 DGNIWLVSYQQGVIEYNPEKSEFVSLSYEELGLRDSKLQASTIFF---DSNRNLWIGTVK 286
Query: 340 SGLNKINTRRQYFQHLFEYTNELPLQSNNVRTIYRSQDQALWIGTEGAGLKRLAVNSTTF 399
GL +N H + Y + SN + +Y + LW+GT A L ++ N+ F
Sbjct: 287 EGLYSVNNETGRSNH-YRYGRPGSIGSNTINALYEDSNGILWVGT-SAYLNKINPNAILF 344
Query: 400 EHYTSFFAKAL-----GQQTQHLNLILRSIV---QDKQGILWF----------------- 434
H ++F L T L++ ++ D GI
Sbjct: 345 NH--NYFQPDLLDSLAADTTFSLHITADDVLLVGSDGHGITMMDARDPLDLKKLAIIDPP 402
Query: 435 -----ASNY------GLGRLTPNGEFNLLN--------VADSRDTSAEANYIRSLELDNQ 475
+ NY G + E LLN V ++ +AE R L+
Sbjct: 403 PLNGKSINYIGPASSGKVWVMTFDEIWLLNLKTRELQRVFENESYTAELLTARYLD---- 458
Query: 476 NRLWVATSHALYRKSSVN--DEFTPVPLTGIENFHPIQNLLLTLKS-DKNILWIGSLNGL 532
LWV T+ L+R N D + + +FH + L S D+ LWIG+ +G+
Sbjct: 459 GNLWVGTTEGLWRLDQNNRIDRYRVID----ADFHRNNRINSILPSKDRQYLWIGTESGV 514
Query: 533 VKLDMQTGH----GEVFYHDPHDKNSIINNRIRDIFVASNGDTWFATHGG---ISRLPAQ 585
+ D+QT ++ P + N ++ + D F W T G + L Q
Sbjct: 515 HQFDIQTSSFKNLNQLIKEVPEEANDVVLSLALDQFER----LWIGTFGNGLVVIDLTRQ 570
Query: 586 ALSPIFSDYTREQGLPSDTIYALLEDDDNHIWFSSNAGIGKLNPHNGKIINFNEQEGLQA 645
+ I S G+ D+IY++ D + +IW + G+ +++P++ + F E
Sbjct: 571 VATTINS---TTSGI-HDSIYSMELDGNKYIWAGTGRGLFRVSPNDFSLTQFTLAEDQPI 626
Query: 646 LEFNGGVKLKDSDGDLWFGGINGINRFNPKTLPNQRSEARVALTAYKIAGQKQTILD--- 702
LEFN G D G+L+FGGINGI F + +T I I D
Sbjct: 627 LEFNTGASTHDRQGNLYFGGINGIINFRAEAYQPDEVPPTPVITEIMINNGPVLIGDEHK 686
Query: 703 --LSHPPQIVMNYA----DQLISFEVTSLDFSYPGKNRFSYFLEGFDNQWHDLPT-GNEI 755
L+ P + D +SF + L+++ P NR+ Y LEG+DN+W + +
Sbjct: 687 KRLAKPANLAKEVTFFPEDTSVSFVFSGLNYADPKNNRYRYMLEGYDNEWIETDAKARRV 746
Query: 756 TFTNIDPGNYLLHVRHSLEYNSKGNYALLVNLTVKAPFYRTPFAYAFY--VLFTLVSMGW 813
T+TN+ PG+Y V+ S + + + VK + +P A+ Y +L ++
Sbjct: 747 TYTNLQPGDYRFLVKASNKDGVWSEVPAELKVHVKTSGWLSPSAFTLYGFILGLIILAFS 806
Query: 814 ALRWRKQKRSQQQEFETSIRASEERLKLALWASGDGMWDWNIQEQQVYRTNTDIAVPQW- 872
L W + + + + + SEERLKL+LW SGD +WDW I ++ +N +W
Sbjct: 807 YLIWARVRERRMAALQ--LTQSEERLKLSLWGSGDELWDWQIPSGALHLSN------EWP 858
Query: 873 ---------NGHQLLHDNAHPEDRERFKYELTEHLQGRSPFFEVEYRIEHSPGKWVWILE 923
+G+ + + N HP D + L HL +S +E YRI G W+W+L+
Sbjct: 859 YDFPRDGVRSGYSMANSNIHPNDLPYVRQSLNAHLADKSMHYESTYRISDEKGGWIWVLD 918
Query: 924 RGKVVETNAQERPIRMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVN 983
RGKVV + ++P+RM GT +NIT K E +L + + +++++ V + ++ +VN
Sbjct: 919 RGKVVSRDDNQKPLRMAGTLKNITELKNTEQQLSMIVKSFDNISDGVWILDENFHYIAVN 978
Query: 984 PAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARRAIL 1043
AF+ ITG+ E ++ K + A + + F + ++L W GE+ + K
Sbjct: 979 KAFTKITGFEESEVLGKLMKVSALHKITDEEFRELREELADKGFWYGELVAKRKDNSTYP 1038
Query: 1044 VWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHA 1103
+ + I+ V+D G ++V VF+DIT RK+AE++LR LA+ D LT L NRT F++
Sbjct: 1039 IEINIDVVLDNDGNVINYVGVFSDITFRKQAEKELRRLATVDQLTDLKNRTSFRNHFEDL 1098
Query: 1104 ISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVRE-GDTVARLGG 1162
I+ + R + ALLF+DLD FK INDS+GH IGD LL VA LQ E VARLGG
Sbjct: 1099 IAHSERGDQ-HALLFIDLDNFKRINDSLGHGIGDELLIYVAKILQEITSEQHGVVARLGG 1157
Query: 1163 DEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLI 1222
DEFT++L+ V I++ +L F P L + +S SIGI +YP + + L+
Sbjct: 1158 DEFTVLLQDVDTWNKPAKIAQAILDEFAKPLPLSTAEVVVSPSIGIVMYPENGLSAEELL 1217
Query: 1223 KFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRN 1282
K ADTAMY+AK G+N +QFYT ++NE A + LE L+QAI +E + YQPK L+
Sbjct: 1218 KNADTAMYYAKKKGKNTYQFYTRQMNEQAKLRITLEGELRQAIEKDEFVMFYQPKVSLQT 1277
Query: 1283 GSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSD 1342
G +TG+EAL+RW++ G + P EFIPLAEE G I I VI ++C Q+ +W G
Sbjct: 1278 GKITGMEALVRWRNPRRGLVLPNEFIPLAEEAGFIIPISQRVIEKTCLQIRDWQNRGIFH 1337
Query: 1343 ISMAVNLSARQL-KADIISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKA 1401
+AVNLSA Q ++ T++ AL ++ + ALE E+TE M+M + +S+ + L+
Sbjct: 1338 GKVAVNLSAVQFYHENLWETVKNALHLAKIEPDALEFEITEGMVMEDLTQSIQQMRTLRE 1397
Query: 1402 LGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLEL 1461
+G+++A+DDFG GYSSL LK FPIDTLKIDR FV D+ + D + ++I+ LAH+L++
Sbjct: 1398 MGISLALDDFGVGYSSLGNLKDFPIDTLKIDRTFVWDLEDSDRDRNLVASIVTLAHNLDI 1457
Query: 1462 NVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQQRTKD 1509
VVAEGVE + Q++ L GC+++QGF+ S+P+ D +T+L + D
Sbjct: 1458 KVVAEGVENRNQVDALRDMGCEEIQGFIFSRPVPPWDIETMLNIKDFD 1505
Score = 73.6 bits (179), Expect = 2e-16
Identities = 107/481 (22%), Positives = 196/481 (40%), Gaps = 75/481 (15%)
Query: 37 PLNAANTQLKFEHIRSEDGLNQNTITSLFMDSAGMLWIGT-QDGLHSYNGYNFNLFIHSP 95
P + L +E + D Q +++F DS LWIGT ++GL+S N +
Sbjct: 247 PEKSEFVSLSYEELGLRDSKLQ--ASTIFFDSNRNLWIGTVKEGLYSVNNETGRSNHYRY 304
Query: 96 NDPKSISESYVSDIIQDAEGYLWVGSFSQGINRLDLKTGTFKRFGVEQGLTDPRVTKLNI 155
P SI + ++ + +D+ G LWVG+ S +N+++ F + L D
Sbjct: 305 GRPGSIGSNTINALYEDSNGILWVGT-SAYLNKINPNAILFNHNYFQPDLLD-------- 355
Query: 156 VGNTLWIGTQSGLFSFSTRTNRLTKVSLGTSIEPYITSLANVDNTYLLAGTKGSGTFAVS 215
++ T+ +IT+ + LL G+ G G +
Sbjct: 356 ------------------------SLAADTTFSLHITA-----DDVLLVGSDGHGITMMD 386
Query: 216 ANTITRLN---------IPQDAIAYQVKANSSRAITLALGNQLWHYDLATQQGKALWQAD 266
A L + +I Y A+S + + +++W +L T++ L +
Sbjct: 387 ARDPLDLKKLAIIDPPPLNGKSINYIGPASSGKVWVMTF-DEIWLLNLKTRE---LQRVF 442
Query: 267 KNIPYIKDFIQTP--EGQFWVVGPEAGLIQLEREADKFVATYHQYDMKRTNSISENNILS 324
+N Y + + +G WV G GL +L++ D R N I N+IL
Sbjct: 443 ENESYTAELLTARYLDGNLWV-GTTEGLWRLDQNNRIDRYRVIDADFHRNNRI--NSILP 499
Query: 325 LLEDPFGNLWLGASYSGLNKINTRRQYFQHLFEYTNELPLQSNNV-RTIYRSQDQALWIG 383
+ + LW+G SG+++ + + F++L + E+P ++N+V ++ Q + LWIG
Sbjct: 500 SKDRQY--LWIGTE-SGVHQFDIQTSSFKNLNQLIKEVPEEANDVVLSLALDQFERLWIG 556
Query: 384 TEGAGLKRLAVNSTTFEHYTSFFAKALGQQTQHLNLILRSIVQDKQGILWFASNYGLGRL 443
T G GL + + T A + T ++ + S+ D +W + GL R+
Sbjct: 557 TFGNGLVVIDL--------TRQVATTINSTTSGIHDSIYSMELDGNKYIWAGTGRGLFRV 608
Query: 444 TPNGEFNLLNVADSRDTSAEANYIRSLELDNQNRLWVATSHAL--YRKSSVN-DEFTPVP 500
+PN +F+L + D + D Q L+ + + +R + DE P P
Sbjct: 609 SPN-DFSLTQFTLAEDQPILEFNTGASTHDRQGNLYFGGINGIINFRAEAYQPDEVPPTP 667
Query: 501 L 501
+
Sbjct: 668 V 668