Pairwise Alignments

Query, 484 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 487 a.a., Selenoprotein O and cysteine-containing homologs from Pseudomonas fluorescens GW456-L13

 Score =  444 bits (1141), Expect = e-129
 Identities = 243/477 (50%), Positives = 307/477 (64%), Gaps = 15/477 (3%)

Query: 14  FYSQVYPQGISNPHWLAWSDDAAALIGLHQP---TDELLQGLSGNAAVEGASYYAQVYSG 70
           F + V P+ I NP  +  S  A AL+ L      T E  +  SG+     A   A VYSG
Sbjct: 20  FSAHVLPEPIDNPRLVVASPAAMALLDLDPSVAETPEFAELFSGHKLWADAIPRAMVYSG 79

Query: 71  HQFGGYTPRLGDGRSIILGEAIGPNGA-WDVALKGGGPTPYSRHGDGRAVMRSAVREFLV 129
           HQFG Y P+LGDGR ++LGE     G  WD+ LKG G TP+SR GDGRAV+RS++REFL 
Sbjct: 80  HQFGSYNPQLGDGRGLLLGEVYNEAGEHWDLHLKGAGQTPFSRMGDGRAVLRSSIREFLA 139

Query: 130 SEALHHLGVPTTRALAVIGSDMPVWRESQETAAITVRLARSHIRFGHFEFFSHSERGQAD 189
           SEAL+ L +PTTRAL VIGSD PVWRE QE AA+ +RLA SH+RFGHFE+F +++R +  
Sbjct: 140 SEALNALNIPTTRALCVIGSDTPVWREKQERAAMILRLAPSHVRFGHFEYFYYTKRPEQQ 199

Query: 190 KLTQLLNFTLKQHYPHLSCDPAGYKAWFLQVVQDSAKMIAHWQAIGFAHGVMNTDNMSIL 249
           K  +L +  L  H+P     P  Y A F +VV+ +A++IA WQA GF HGVMNTDNMSIL
Sbjct: 200 K--ELGDHVLAMHFPQCLEQPEPYLAMFREVVERNAELIAKWQAYGFCHGVMNTDNMSIL 257

Query: 250 GDSFDFGPFAFLDTFQEDFICNHSDPDGRYAFGQQPGIGLWNLQRLAQALTPVIASDDLI 309
           G +FDFGPFAFLD F  +FICNHSD  GRY+F  Q  IG WNL  LAQALTP I+ + L 
Sbjct: 258 GITFDFGPFAFLDDFDANFICNHSDDQGRYSFSNQVPIGQWNLSALAQALTPFISVEALR 317

Query: 310 AALNQYQHALVQHYLALMRAKLGLVQQADSSAEQDQQDLELIGRFTVLMEKNQLDYSHTW 369
             L  Y      HYL LMR +LGL     ++AE D Q  +L+     LM+ + +DYS  +
Sbjct: 318 ETLGLYLPLFQAHYLDLMRRRLGL-----TTAEDDDQ--KLLENLLQLMQNSGVDYSLFF 370

Query: 370 RRFGQLDPSSLHSSLRDDFIDLNEFDAWYQVYQARLGK--VTDVEAWQQQCNRVNPKYIL 427
           RR G   P    + LR+DF+DL  FDAW ++Y AR  +    D E  +Q+ + VNP YIL
Sbjct: 371 RRLGDQAPEQAITRLREDFVDLKGFDAWGELYVARGSREGTLDQEQRRQRMHAVNPLYIL 430

Query: 428 RNYLAQEAIIAVDEGNLAQLQRLHQVLRQPFTEQIEHEELAKRPPDWGQGLIMSCSS 484
           RNYLAQ AI A   G+ ++++RLH VL  PF EQ   E  A+RPP+WG+ L +SCSS
Sbjct: 431 RNYLAQNAIDAAQNGDYSEVRRLHAVLSNPFEEQPGMESYAERPPEWGKHLEISCSS 487