Pairwise Alignments

Query, 439 a.a., putrescine-ornithine antiporter (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 475 a.a., amino acid APC transporter from Pseudomonas simiae WCS417

 Score =  125 bits (315), Expect = 2e-33
 Identities = 113/439 (25%), Positives = 200/439 (45%), Gaps = 38/439 (8%)

Query: 1   MSKSENKIGVVQLTIITIVNMMGSGIIMLPTQLA---QVGTISVLSWLVTAAGSTALAFA 57
           MS+S  K+ +  L  + + +M+G GI  LP  +A    VG + ++ W++TA G   LAF 
Sbjct: 1   MSESPGKLRLGALVALVVGSMIGGGIFSLPQNMAASADVGAV-LIGWVITAVGMLTLAFV 59

Query: 58  FAKCGMFSKK---SGGMGGYAEYAFGRSGNFMANYTYAVSLLIANVA---IAISAVGYAA 111
           F    + ++K    GG+  YA+  FG    F + + Y +S  + NV    +  S +GY  
Sbjct: 60  FQT--LANRKPDLDGGVYAYAKAGFGDYMGFSSAWGYWISAWLGNVGYFVLLFSTLGYFF 117

Query: 112 VLLEVNLSPMAICLATIGVLWLATVANFGGARITGRVSSVTVWGIILPVIGVSLIGWFWF 171
            +     +P A+  A++ +LW        G +    ++ VT    ++P++   LI  F F
Sbjct: 118 PIFGEGNTPAAVIGASV-LLWAVHFLVLRGIKEAAFINLVTTVAKVVPLVLFVLIALFAF 176

Query: 172 DIDLYK----GAWNPHDMPFFKALGGSIAMTLWAFLGLESACANSEAVDNPEKNVPIAVM 227
            +D++     G  NP        +   + +T+W F+G+E A   S   +         V+
Sbjct: 177 KLDIFTADIWGLKNPDLGSVMNQVRNMMLVTVWVFIGIEGASIFSARAEKRSDVGKATVI 236

Query: 228 GGTLGAALIYIVSTNVIA-GIVPNAELASSNAPFGLAFAQMFNPVVGK----IVMACAII 282
           G      L++++  NV++ GI+   ELA    P   + A +   VVG     ++    +I
Sbjct: 237 GFI--TVLLFLMLVNVLSLGIMTQPELAKLQNP---SMAAVLEHVVGHWGAVLISVGLVI 291

Query: 283 SCTGSLLGWQFTIAQVFKASADEGFFPKVFAKVSKADAP---IWGMTIIVSIQTLLSLMT 339
           S  G+LL W    A++  A+A +   P+   K +    P   +W    +V I  +++L +
Sbjct: 292 SLLGALLSWVLLCAEIMFAAAKDHTMPEFLRKENANHVPANALWLTNAMVQIFLVITLFS 351

Query: 340 ISPSLSKQFEALVNLAVVTNIVPYILSMA---ALGVMQKQLKVPANKARVANVIAVIGAL 396
            S  LS     L+ LA    +VPY+ S A    L V  +  +    + +    I  I  +
Sbjct: 352 ASTYLS-----LIYLATSMILVPYLWSAAYALLLAVRGETYENALKERQKDLFIGAIALI 406

Query: 397 YSFYALYSSGETAVMLGAI 415
           Y+ + LY+ G   ++L A+
Sbjct: 407 YAVWLLYAGGTKYLLLSAL 425